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Rosetta
2019.07
|
Namespaces | |
hybridize | |
sanitize | |
Variables | |
BooleanOptionKey const | cm |
BooleanOptionKey const | start_models_only |
StringOptionKey const | aln_format |
BooleanOptionKey const | recover_side_chains |
FileVectorOptionKey const | steal_extra_residues |
StringOptionKey const | loop_mover |
IntegerOptionKey const | loop_close_level |
IntegerOptionKey const | min_loop_size |
IntegerOptionKey const | max_loop_rebuild |
RealOptionKey const | loop_rebuild_filter |
RealOptionKey const | aln_length_filter_quantile |
IntegerOptionKey const | aln_length_filter |
StringVectorOptionKey const | seq_score |
StringOptionKey const | aligner |
RealOptionKey const | min_gap_open |
RealOptionKey const | max_gap_open |
RealOptionKey const | min_gap_extend |
RealOptionKey const | max_gap_extend |
IntegerOptionKey const | nn |
FileVectorOptionKey const | ev_map |
FileVectorOptionKey const | hh_map |
IntegerVectorOptionKey const | seeds |
IntegerOptionKey const | nremain_reset |
RealVectorOptionKey const | quota_per_silent |
RealOptionKey const | similarity_cut |
RealOptionKey const | similarity_limit |
RealOptionKey const | refsimilarity_cut |
StringOptionKey const basic::options::OptionKeys::cm::aligner |
Referenced by add_rosetta_options_6().
StringOptionKey const basic::options::OptionKeys::cm::aln_format |
Referenced by add_rosetta_options_6(), and main().
IntegerOptionKey const basic::options::OptionKeys::cm::aln_length_filter |
Referenced by add_rosetta_options_6().
RealOptionKey const basic::options::OptionKeys::cm::aln_length_filter_quantile |
Referenced by add_rosetta_options_6().
BooleanOptionKey const basic::options::OptionKeys::cm::cm |
Referenced by add_rosetta_options_6(), and processRegions().
FileVectorOptionKey const basic::options::OptionKeys::cm::ev_map |
Referenced by add_rosetta_options_6().
FileVectorOptionKey const basic::options::OptionKeys::cm::hh_map |
Referenced by add_rosetta_options_6().
IntegerOptionKey const basic::options::OptionKeys::cm::loop_close_level |
Referenced by add_rosetta_options_6().
StringOptionKey const basic::options::OptionKeys::cm::loop_mover |
Referenced by add_rosetta_options_6().
RealOptionKey const basic::options::OptionKeys::cm::loop_rebuild_filter |
Referenced by add_rosetta_options_6().
RealOptionKey const basic::options::OptionKeys::cm::max_gap_extend |
Referenced by add_rosetta_options_6().
RealOptionKey const basic::options::OptionKeys::cm::max_gap_open |
Referenced by add_rosetta_options_6().
IntegerOptionKey const basic::options::OptionKeys::cm::max_loop_rebuild |
Referenced by add_rosetta_options_6().
RealOptionKey const basic::options::OptionKeys::cm::min_gap_extend |
Referenced by add_rosetta_options_6(), and main().
RealOptionKey const basic::options::OptionKeys::cm::min_gap_open |
Referenced by add_rosetta_options_6(), and main().
IntegerOptionKey const basic::options::OptionKeys::cm::min_loop_size |
Referenced by add_rosetta_options_6(), and main().
IntegerOptionKey const basic::options::OptionKeys::cm::nn |
Referenced by add_rosetta_options_6(), numeric::linear_algebra::qzval(), and numeric::linear_algebra::qzvec().
IntegerOptionKey const basic::options::OptionKeys::cm::nremain_reset |
Referenced by add_rosetta_options_6(), and main().
RealVectorOptionKey const basic::options::OptionKeys::cm::quota_per_silent |
Referenced by add_rosetta_options_6(), and get_quota_per_silent().
BooleanOptionKey const basic::options::OptionKeys::cm::recover_side_chains |
Referenced by add_rosetta_options_6().
RealOptionKey const basic::options::OptionKeys::cm::refsimilarity_cut |
Referenced by add_rosetta_options_6(), and main().
IntegerVectorOptionKey const basic::options::OptionKeys::cm::seeds |
Referenced by add_rosetta_options_6(), and main().
StringVectorOptionKey const basic::options::OptionKeys::cm::seq_score |
Referenced by add_rosetta_options_6(), and main().
RealOptionKey const basic::options::OptionKeys::cm::similarity_cut |
Referenced by add_rosetta_options_6(), and main().
RealOptionKey const basic::options::OptionKeys::cm::similarity_limit |
Referenced by add_rosetta_options_6().
BooleanOptionKey const basic::options::OptionKeys::cm::start_models_only |
Referenced by add_rosetta_options_6().
FileVectorOptionKey const basic::options::OptionKeys::cm::steal_extra_residues |
Referenced by add_rosetta_options_6().