out Namespace Reference

Namespaces
	file
	path

Functions
BooleanOptionKey const	out ("out")
BooleanOptionKey const	overwrite ("out:overwrite")
IntegerOptionKey const	nstruct ("out:nstruct")
IntegerOptionKey const	shuffle_nstruct ("out:shuffle_nstruct")
StringOptionKey const	prefix ("out:prefix")
StringOptionKey const	suffix ("out:suffix")
BooleanOptionKey const	mover_controlled_output_name ("out:mover_controlled_output_name")
BooleanOptionKey const	no_nstruct_label ("out:no_nstruct_label")
BooleanOptionKey const	pdb_gz ("out:pdb_gz")
BooleanOptionKey const	pdb ("out:pdb")
BooleanOptionKey const	silent_gz ("out:silent_gz")
BooleanOptionKey const	membrane_pdb ("out:membrane_pdb")
RealOptionKey const	membrane_pdb_thickness ("out:membrane_pdb_thickness")
BooleanOptionKey const	mmCIF ("out:mmCIF")
BooleanOptionKey const	mmCIF_gz ("out:mmCIF_gz")
BooleanOptionKey const	use_database ("out:use_database")
IntegerOptionKey const	database_protocol_id ("out:database_protocol_id")
StringVectorOptionKey const	database_filter ("out:database_filter")
IntegerVectorOptionKey const	resume_batch ("out:resume_batch")
BooleanOptionKey const	nooutput ("out:nooutput")
BooleanOptionKey const	output ("out:output")
RealOptionKey const	scorecut ("out:scorecut")
BooleanOptionKey const	show_accessed_options ("out:show_accessed_options")
BooleanOptionKey const	show_unused_options ("out:show_unused_options")
FileOptionKey const	sf ("out:sf")
StringVectorOptionKey const	mute ("out:mute")
StringVectorOptionKey const	unmute ("out:unmute")
IntegerOptionKey const	level ("out:level")
StringVectorOptionKey const	levels ("out:levels")
BooleanOptionKey const	no_color ("out:no_color")
BooleanOptionKey const	chname ("out:chname")
BooleanOptionKey const	chtimestamp ("out:chtimestamp")
BooleanOptionKey const	dry_run ("out:dry_run")
StringOptionKey const	mpi_tracer_to_file ("out:mpi_tracer_to_file")
IntegerOptionKey const	std_IO_exit_error_code ("out:std_IO_exit_error_code")
StringOptionKey const	user_tag ("out:user_tag")
StringOptionKey const	output_tag ("out:output_tag")
BooleanOptionKey const	save_times ("out:save_times")

Function Documentation

BooleanOptionKey const out::chname

(

"out:chname"

)

BooleanOptionKey const out::chtimestamp

(

"out:chtimestamp"

)

StringVectorOptionKey const out::database_filter

(

"out:database_filter"

)

IntegerOptionKey const out::database_protocol_id

(

"out:database_protocol_id"

)

BooleanOptionKey const out::dry_run

(

"out:dry_run"

)

Referenced by basic::ComparingTracer::ComparingTracer().

IntegerOptionKey const out::level

(

"out:level"

)

StringVectorOptionKey const out::levels

(

"out:levels"

)

BooleanOptionKey const out::membrane_pdb

(

"out:membrane_pdb"

)

RealOptionKey const out::membrane_pdb_thickness

(

"out:membrane_pdb_thickness"

)

BooleanOptionKey const out::mmCIF

(

"out:mmCIF"

)

BooleanOptionKey const out::mmCIF_gz

(

"out:mmCIF_gz"

)

BooleanOptionKey const out::mover_controlled_output_name

(

"out:mover_controlled_output_name"

)

StringOptionKey const out::mpi_tracer_to_file

(

"out:mpi_tracer_to_file"

)

Referenced by basic::options::pre_tracer_process().

StringVectorOptionKey const out::mute

(

"out:mute"

)

BooleanOptionKey const out::no_color

(

"out:no_color"

)

BooleanOptionKey const out::no_nstruct_label

(

"out:no_nstruct_label"

)

BooleanOptionKey const out::nooutput

(

"out:nooutput"

)

Referenced by main().

IntegerOptionKey const out::nstruct

(

"out:nstruct"

)

Referenced by cluster_outfile_test(), cluster_test(), create_ensemble(), erraser2_test(), main(), rna_build_helix_test(), rna_design_test(), FragmentAssemblyMover::run(), stepwise_monte_carlo_legacy(), and swa_rna_sample().

BooleanOptionKey const out::out

(

"out"

)

BooleanOptionKey const out::output

(

"out:output"

)

Referenced by main().

StringOptionKey const out::output_tag

(

"out:output_tag"

)

BooleanOptionKey const out::overwrite

(

"out:overwrite"

)

Referenced by build_full_model_test(), BuildFullModel::BuildFullModel(), StepWiseJobQueen::complete_larval_job_maturation(), main(), rna_score_test(), and stepwise_monte_carlo_legacy().

BooleanOptionKey const out::pdb

(

"out:pdb"

)

Referenced by register_options(), and run().

BooleanOptionKey const out::pdb_gz

(

"out:pdb_gz"

)

Referenced by main().

StringOptionKey const out::prefix

(

"out:prefix"

)

Referenced by calc_rmsf_and_avrg(), extract_pdbs_test(), main(), nucleobase_probe_score_test(), and sequence_tolerance_main().

IntegerVectorOptionKey const out::resume_batch

(

"out:resume_batch"

)

BooleanOptionKey const out::save_times

(

"out:save_times"

)

RealOptionKey const out::scorecut

(

"out:scorecut"

)

FileOptionKey const out::sf

(

"out:sf"

)

BooleanOptionKey const out::show_accessed_options

(

"out:show_accessed_options"

)

BooleanOptionKey const out::show_unused_options

(

"out:show_unused_options"

)

IntegerOptionKey const out::shuffle_nstruct

(

"out:shuffle_nstruct"

)

BooleanOptionKey const out::silent_gz

(

"out:silent_gz"

)

IntegerOptionKey const out::std_IO_exit_error_code

(

"out:std_IO_exit_error_code"

)

StringOptionKey const out::suffix

(

"out:suffix"

)

StringVectorOptionKey const out::unmute

(

"out:unmute"

)

BooleanOptionKey const out::use_database

(

"out:use_database"

)

StringOptionKey const out::user_tag

(

"out:user_tag"

)