basic::options::OptionKeys::hotspot Namespace Reference

Variables
BooleanOptionKey const	hotspot
BooleanOptionKey const	allow_gly
BooleanOptionKey const	allow_proline
BooleanOptionKey const	benchmark
StringVectorOptionKey const	residue
FileOptionKey const	hashfile
FileOptionKey const	target
IntegerOptionKey const	target_res
RealOptionKey const	target_dist
FileOptionKey const	density
FileOptionKey const	weighted_density
FileOptionKey const	rms_target
FileOptionKey const	rms_hotspot
IntegerOptionKey const	rms_hotspot_res
BooleanOptionKey const	rescore
RealOptionKey const	threshold
BooleanOptionKey const	sc_only
BooleanOptionKey const	fxnal_group
BooleanOptionKey const	cluster
BooleanOptionKey const	colonyE
IntegerOptionKey const	length
BooleanOptionKey const	envhb
RealOptionKey const	angle
IntegerOptionKey const	angle_res
IntegerOptionKey const	batch_size

Variable Documentation

BooleanOptionKey const basic::options::OptionKeys::hotspot::allow_gly

Referenced by add_rosetta_options_9().

BooleanOptionKey const basic::options::OptionKeys::hotspot::allow_proline

Referenced by add_rosetta_options_9().

RealOptionKey const basic::options::OptionKeys::hotspot::angle

Referenced by add_rosetta_options_9(), numeric::xyzTransform< numeric::Real >::align(), numeric::angle_degrees(), numeric::angle_radians(), numeric::conversions::degrees(), numeric::dihedral_radians(), numeric::conversions::from_degrees(), numeric::conversions::from_radians(), zinc2_homodimer_setup::gridsearch_symmetric_alignments(), minimize_test(), numeric::operator<<(), numeric::proj_angl(), numeric::conversions::radians(), numeric::xyzTransform< numeric::Real >::rotation_angle(), numeric::xyzTransform< numeric::Real >::rotation_angle_degrees(), numeric::xyzTransform< numeric::Real >::rotation_axis(), numeric::kinematic_closure::test_bondangle(), numeric::conversions::to_degrees(), numeric::conversions::to_radians(), numeric::urs_R2ang(), numeric::wrap_2pi(), and numeric::wrap_360().

IntegerOptionKey const basic::options::OptionKeys::hotspot::angle_res

Referenced by add_rosetta_options_9().

IntegerOptionKey const basic::options::OptionKeys::hotspot::batch_size

Referenced by add_rosetta_options_9().

BooleanOptionKey const basic::options::OptionKeys::hotspot::benchmark

Referenced by add_rosetta_options_9().

BooleanOptionKey const basic::options::OptionKeys::hotspot::cluster

Referenced by add_rosetta_options_9().

BooleanOptionKey const basic::options::OptionKeys::hotspot::colonyE

Referenced by add_rosetta_options_9().

FileOptionKey const basic::options::OptionKeys::hotspot::density

Referenced by add_rosetta_options_9().

BooleanOptionKey const basic::options::OptionKeys::hotspot::envhb

Referenced by add_rosetta_options_9().

BooleanOptionKey const basic::options::OptionKeys::hotspot::fxnal_group

Referenced by add_rosetta_options_9().

FileOptionKey const basic::options::OptionKeys::hotspot::hashfile

Referenced by add_rosetta_options_9().

BooleanOptionKey const basic::options::OptionKeys::hotspot::hotspot

Referenced by add_rosetta_options_9().

IntegerOptionKey const basic::options::OptionKeys::hotspot::length

Referenced by add_rosetta_options_9(), close_loops(), utility::encode6bit(), find_neighbors_directional(), find_residues_around_mutation(), utility::tag::handle_xml_error(), utility::tag::handle_xml_warning(), ExposedStrandMover::move_superimpose(), fmt::BasicWriter< Char >::operator<<(), PDB_IOBenchmark::setUp(), setup_ca_constraints(), slice_ellipsoid_envelope(), and slice_sample_res_and_surrounding().

BooleanOptionKey const basic::options::OptionKeys::hotspot::rescore

Referenced by add_rosetta_options_9(), and main().

StringVectorOptionKey const basic::options::OptionKeys::hotspot::residue

Referenced by add_rosetta_options_9(), DockGlycansProtocol::apply(), go_main(), mutate_and_score_RNP(), and run_pep_prep().

FileOptionKey const basic::options::OptionKeys::hotspot::rms_hotspot

Referenced by add_rosetta_options_9().

IntegerOptionKey const basic::options::OptionKeys::hotspot::rms_hotspot_res

Referenced by add_rosetta_options_9().

FileOptionKey const basic::options::OptionKeys::hotspot::rms_target

Referenced by add_rosetta_options_9().

BooleanOptionKey const basic::options::OptionKeys::hotspot::sc_only

Referenced by add_rosetta_options_9().

FileOptionKey const basic::options::OptionKeys::hotspot::target

Referenced by add_rosetta_options_9(), utility::graph::RingEdgeAnnotationVisitor< Graph, EdgeMap, PathMap >::back_edge(), utility::graph::breadth_first_visit_prune(), utility::graph::depth_first_visit_sort_impl(), numeric::fourier::SHT::forwardS2(), utility::graph::RingSizeVisitor< Graph, DistanceMap, LabelMap >::gray_target(), utility::graph::RingDetection< Graph >::Initialize(), utility::graph::RingDetection< Graph >::LengthOfSmallestCycleWithVertex(), utility::graph::RingSizeVisitor< Graph, DistanceMap, LabelMap >::tree_edge(), and utility::graph::RingEdgeAnnotationVisitor< Graph, EdgeMap, PathMap >::tree_edge().

RealOptionKey const basic::options::OptionKeys::hotspot::target_dist

Referenced by add_rosetta_options_9().

IntegerOptionKey const basic::options::OptionKeys::hotspot::target_res

Referenced by add_rosetta_options_9().

RealOptionKey const basic::options::OptionKeys::hotspot::threshold

Referenced by add_rosetta_options_9(), and main().

FileOptionKey const basic::options::OptionKeys::hotspot::weighted_density

Referenced by add_rosetta_options_9().