basic::options::OptionKeys::enzdes Namespace Reference

Variables
BooleanOptionKey const	enzdes
StringOptionKey const	checkpoint
BooleanOptionKey const	enz_score
BooleanOptionKey const	enz_repack
BooleanOptionKey const	cst_opt
BooleanOptionKey const	cst_predock
RealOptionKey const	trans_magnitude
RealOptionKey const	rot_magnitude
RealOptionKey const	dock_trials
BooleanOptionKey const	cst_min
BooleanOptionKey const	cst_design
IntegerOptionKey const	design_min_cycles
BooleanOptionKey const	make_consensus_mutations
BooleanOptionKey const	bb_min
RealOptionKey const	bb_min_allowed_dev
RealOptionKey const	loop_bb_min_allowed_dev
RealOptionKey const	minimize_ligand_torsions
RealOptionKey const	minimize_all_ligand_torsions
BooleanOptionKey const	chi_min
BooleanOptionKey const	min_all_jumps
BooleanOptionKey const	cst_dock
BooleanOptionKey const	run_ligand_motifs
BooleanOptionKey const	enz_debug
FileOptionKey const	cstfile
FileOptionKey const	enz_loops_file
BooleanOptionKey const	flexbb_protocol
BooleanOptionKey const	remodel_protocol
BooleanOptionKey const	kic_loop_sampling
StringOptionKey const	dump_loop_samples
BooleanOptionKey const	fix_catalytic_aa
IntegerOptionKey const	additional_packing_ligand_rb_confs
IntegerOptionKey const	ex_catalytic_rot
IntegerOptionKey const	single_loop_ensemble_size
IntegerOptionKey const	loop_generator_trials
BooleanOptionKey const	no_catres_min_in_loopgen
RealOptionKey const	mc_kt_low
RealOptionKey const	mc_kt_high
RealOptionKey const	min_cacb_deviation
RealOptionKey const	max_bb_deviation
RealOptionKey const	max_bb_deviation_from_startstruct
IntegerOptionKey const	remodel_trials
BooleanOptionKey const	remodel_secmatch
BooleanOptionKey const	dump_inverse_rotamers
RealOptionKey const	remodel_aggressiveness
RealOptionKey const	favor_native_res
BooleanOptionKey const	detect_design_interface
BooleanOptionKey const	include_catres_in_interface_detection
BooleanOptionKey const	arg_sweep_interface
RealOptionKey const	arg_sweep_cutoff
RealOptionKey const	cut1
RealOptionKey const	cut2
RealOptionKey const	cut3
RealOptionKey const	cut4
RealOptionKey const	lig_packer_weight
BooleanOptionKey const	no_unconstrained_repack
RealOptionKey const	secmatch_Ecutoff
FileOptionKey const	change_lig
StringOptionKey const	process_ligrot_separately
BooleanOptionKey const	start_from_random_rb_conf
RealOptionKey const	bb_bump_cutoff
RealOptionKey const	sc_sc_bump_cutoff
BooleanOptionKey const	no_packstat_calculation
StringOptionKey const	compare_native
BooleanOptionKey const	final_repack_without_ligand
BooleanOptionKey const	dump_final_repack_without_ligand_pdb
BooleanOptionKey const	parser_read_cloud_pdb

Variable Documentation

IntegerOptionKey const basic::options::OptionKeys::enzdes::additional_packing_ligand_rb_confs

Referenced by add_rosetta_options_8().

RealOptionKey const basic::options::OptionKeys::enzdes::arg_sweep_cutoff

Referenced by add_rosetta_options_8().

BooleanOptionKey const basic::options::OptionKeys::enzdes::arg_sweep_interface

Referenced by add_rosetta_options_8().

RealOptionKey const basic::options::OptionKeys::enzdes::bb_bump_cutoff

Referenced by add_rosetta_options_8().

BooleanOptionKey const basic::options::OptionKeys::enzdes::bb_min

Referenced by add_rosetta_options_8().

RealOptionKey const basic::options::OptionKeys::enzdes::bb_min_allowed_dev

Referenced by add_rosetta_options_8().

FileOptionKey const basic::options::OptionKeys::enzdes::change_lig

Referenced by add_rosetta_options_8().

StringOptionKey const basic::options::OptionKeys::enzdes::checkpoint

Referenced by add_rosetta_options_8().

BooleanOptionKey const basic::options::OptionKeys::enzdes::chi_min

Referenced by add_rosetta_options_8().

StringOptionKey const basic::options::OptionKeys::enzdes::compare_native

Referenced by add_rosetta_options_8().

BooleanOptionKey const basic::options::OptionKeys::enzdes::cst_design

Referenced by add_rosetta_options_8().

BooleanOptionKey const basic::options::OptionKeys::enzdes::cst_dock

Referenced by add_rosetta_options_8().

BooleanOptionKey const basic::options::OptionKeys::enzdes::cst_min

Referenced by add_rosetta_options_8().

BooleanOptionKey const basic::options::OptionKeys::enzdes::cst_opt

Referenced by add_rosetta_options_8().

BooleanOptionKey const basic::options::OptionKeys::enzdes::cst_predock

Referenced by add_rosetta_options_8().

FileOptionKey const basic::options::OptionKeys::enzdes::cstfile

Referenced by add_rosetta_options_8(), and main().

RealOptionKey const basic::options::OptionKeys::enzdes::cut1

Referenced by add_rosetta_options_8().

RealOptionKey const basic::options::OptionKeys::enzdes::cut2

Referenced by add_rosetta_options_8().

RealOptionKey const basic::options::OptionKeys::enzdes::cut3

Referenced by add_rosetta_options_8().

RealOptionKey const basic::options::OptionKeys::enzdes::cut4

Referenced by add_rosetta_options_8().

IntegerOptionKey const basic::options::OptionKeys::enzdes::design_min_cycles

Referenced by add_rosetta_options_8().

BooleanOptionKey const basic::options::OptionKeys::enzdes::detect_design_interface

Referenced by add_rosetta_options_8().

RealOptionKey const basic::options::OptionKeys::enzdes::dock_trials

Referenced by add_rosetta_options_8().

BooleanOptionKey const basic::options::OptionKeys::enzdes::dump_final_repack_without_ligand_pdb

Referenced by add_rosetta_options_8(), and main().

BooleanOptionKey const basic::options::OptionKeys::enzdes::dump_inverse_rotamers

Referenced by add_rosetta_options_8().

StringOptionKey const basic::options::OptionKeys::enzdes::dump_loop_samples

Referenced by add_rosetta_options_8().

BooleanOptionKey const basic::options::OptionKeys::enzdes::enz_debug

Referenced by add_rosetta_options_8().

FileOptionKey const basic::options::OptionKeys::enzdes::enz_loops_file

Referenced by add_rosetta_options_8().

BooleanOptionKey const basic::options::OptionKeys::enzdes::enz_repack

Referenced by add_rosetta_options_8().

BooleanOptionKey const basic::options::OptionKeys::enzdes::enz_score

Referenced by add_rosetta_options_8(), and main().

BooleanOptionKey const basic::options::OptionKeys::enzdes::enzdes

Referenced by add_rosetta_options_8().

IntegerOptionKey const basic::options::OptionKeys::enzdes::ex_catalytic_rot

Referenced by add_rosetta_options_8().

RealOptionKey const basic::options::OptionKeys::enzdes::favor_native_res

Referenced by add_rosetta_options_8(), and HDdesignMover::task_constraint_setup().

BooleanOptionKey const basic::options::OptionKeys::enzdes::final_repack_without_ligand

Referenced by add_rosetta_options_8(), and main().

BooleanOptionKey const basic::options::OptionKeys::enzdes::fix_catalytic_aa

Referenced by add_rosetta_options_8().

BooleanOptionKey const basic::options::OptionKeys::enzdes::flexbb_protocol

Referenced by add_rosetta_options_8(), and main().

BooleanOptionKey const basic::options::OptionKeys::enzdes::include_catres_in_interface_detection

Referenced by add_rosetta_options_8().

BooleanOptionKey const basic::options::OptionKeys::enzdes::kic_loop_sampling

Referenced by add_rosetta_options_8().

RealOptionKey const basic::options::OptionKeys::enzdes::lig_packer_weight

Referenced by add_rosetta_options_8().

RealOptionKey const basic::options::OptionKeys::enzdes::loop_bb_min_allowed_dev

Referenced by add_rosetta_options_8().

IntegerOptionKey const basic::options::OptionKeys::enzdes::loop_generator_trials

Referenced by add_rosetta_options_8().

BooleanOptionKey const basic::options::OptionKeys::enzdes::make_consensus_mutations

Referenced by add_rosetta_options_8().

RealOptionKey const basic::options::OptionKeys::enzdes::max_bb_deviation

Referenced by add_rosetta_options_8().

RealOptionKey const basic::options::OptionKeys::enzdes::max_bb_deviation_from_startstruct

Referenced by add_rosetta_options_8().

RealOptionKey const basic::options::OptionKeys::enzdes::mc_kt_high

Referenced by add_rosetta_options_8().

RealOptionKey const basic::options::OptionKeys::enzdes::mc_kt_low

Referenced by add_rosetta_options_8().

BooleanOptionKey const basic::options::OptionKeys::enzdes::min_all_jumps

Referenced by add_rosetta_options_8().

RealOptionKey const basic::options::OptionKeys::enzdes::min_cacb_deviation

Referenced by add_rosetta_options_8().

RealOptionKey const basic::options::OptionKeys::enzdes::minimize_all_ligand_torsions

Referenced by add_rosetta_options_8().

RealOptionKey const basic::options::OptionKeys::enzdes::minimize_ligand_torsions

Referenced by add_rosetta_options_8().

BooleanOptionKey const basic::options::OptionKeys::enzdes::no_catres_min_in_loopgen

Referenced by add_rosetta_options_8().

BooleanOptionKey const basic::options::OptionKeys::enzdes::no_packstat_calculation

Referenced by add_rosetta_options_8().

BooleanOptionKey const basic::options::OptionKeys::enzdes::no_unconstrained_repack

Referenced by add_rosetta_options_8().

BooleanOptionKey const basic::options::OptionKeys::enzdes::parser_read_cloud_pdb

Referenced by add_rosetta_options_8().

StringOptionKey const basic::options::OptionKeys::enzdes::process_ligrot_separately

Referenced by add_rosetta_options_8(), and main().

RealOptionKey const basic::options::OptionKeys::enzdes::remodel_aggressiveness

Referenced by add_rosetta_options_8().

BooleanOptionKey const basic::options::OptionKeys::enzdes::remodel_protocol

Referenced by add_rosetta_options_8().

BooleanOptionKey const basic::options::OptionKeys::enzdes::remodel_secmatch

Referenced by add_rosetta_options_8().

IntegerOptionKey const basic::options::OptionKeys::enzdes::remodel_trials

Referenced by add_rosetta_options_8().

RealOptionKey const basic::options::OptionKeys::enzdes::rot_magnitude

Referenced by add_rosetta_options_8().

BooleanOptionKey const basic::options::OptionKeys::enzdes::run_ligand_motifs

Referenced by add_rosetta_options_8().

RealOptionKey const basic::options::OptionKeys::enzdes::sc_sc_bump_cutoff

Referenced by add_rosetta_options_8().

RealOptionKey const basic::options::OptionKeys::enzdes::secmatch_Ecutoff

Referenced by add_rosetta_options_8().

IntegerOptionKey const basic::options::OptionKeys::enzdes::single_loop_ensemble_size

Referenced by add_rosetta_options_8().

BooleanOptionKey const basic::options::OptionKeys::enzdes::start_from_random_rb_conf

Referenced by add_rosetta_options_8().

RealOptionKey const basic::options::OptionKeys::enzdes::trans_magnitude

Referenced by add_rosetta_options_8().