utility::vectorL< L, bool, A > Class Template Reference

std::vector with L-based indexing: bool specialization More...

#include <vectorL_bool.hh>

Inheritance diagram for utility::vectorL< L, bool, A >:

Public Types
typedef super::value_type	value_type
typedef super::reference	reference
typedef super::const_reference	const_reference
typedef super::pointer	pointer
typedef super::const_pointer	const_pointer
typedef super::iterator	iterator
typedef super::const_iterator	const_iterator
typedef super::reverse_iterator	reverse_iterator
typedef super::const_reverse_iterator	const_reverse_iterator
typedef super::size_type	size_type
typedef super::difference_type	difference_type
typedef super::allocator_type	allocator_type
typedef platform::SSize	ssize_type
typedef super::value_type	Value
typedef super::reference	Reference
typedef super::const_reference	ConstReference
typedef super::pointer	Pointer
typedef super::const_pointer	ConstPointer
typedef super::iterator	Iterator
typedef super::const_iterator	ConstIterator
typedef super::reverse_iterator	ReverseIterator
typedef super::const_reverse_iterator	ConstReverseIterator
typedef super::size_type	Size
typedef super::difference_type	Difference
typedef super::allocator_type	Allocator
typedef platform::SSize	SSize

Public Member Functions
	vectorL (allocator_type const &alloc=allocator_type())
	Default constructor. More...
	vectorL (vectorL const &v)
	Copy constructor. More...
template<ssize_type L_, typename T_ , typename A_ >
	vectorL (vectorL< L_, T_, A_ > const &v)
	Assignable copy constructor. More...
	vectorL (super const &v)
	std::vector constructor More...
template<typename T_ , typename A_ >
	vectorL (std::vector< T_, A_ > const &v)
	Assignable std::vector constructor. More...
	vectorL (size_type const num)
	Size constructor. More...
	vectorL (size_type const num, value_type const &value, allocator_type const &alloc=allocator_type())
	Uniform value constructor. More...
template<typename InputIterator >
	vectorL (InputIterator const beg, InputIterator const end, allocator_type const &alloc=allocator_type())
	Iterator range constructor. More...
	vectorL (vectorL &&v)
	C++11 Move constructor. More...
	vectorL (super &&v)
	C++11 std::vector move constructor. More...
	vectorL (std::initializer_list< bool > init, const A &alloc=A())
	C++11 initializer list constructor. More...
virtual	~vectorL ()
	Destructor. More...
vectorL &	operator= (vectorL const &v)
	Copy assignment. More...
template<ssize_type L_, typename T_ , typename A_ >
vectorL &	operator= (vectorL< L_, T_, A_ > const &v)
	Assignable copy assignment. More...
vectorL &	operator= (super const &v)
	std::vector assignment More...
template<typename T_ , typename A_ >
vectorL &	operator= (std::vector< T_, A_ > const &v)
	Assignable std::vector assignment. More...
super const &	vector () const
	std::vector const explicit conversion More...
super &	vector ()
	std::vector explicit conversion More...
void	shrink ()
	Shrink the index map to remove unused capacity. More...
bool	has (index_type const i) const
	Has an element with an index? More...
const_reference	operator[] (index_type const i) const
	vectorL[ i ] const More...
reference	operator[] (index_type const i)
	vectorL[ i ] More...
const_reference	at (index_type const i) const
	vectorL.at( i ) const More...
reference	at (index_type const i)
	vectorL.at( i ) More...
index_type	l () const
	Lower index. More...
index_type	u () const
	Upper index. More...
vectorL< L, bool, A >	invert () const
	Inversion operator. More...
bool	has_value (bool const &t) const
	useful function – was commented out previously due, I think, to a conflict with has() in OptionKeys! Now renamed to has_value(). More...
void	swap (vectorL &v)
	swap( vectorL ) More...

Public Attributes
typedef	vectorL_IndexSelector< L > = 0 >::index_type index_type

Private Types
typedef std::vector< bool, A >	super

Static Private Attributes
static index_type const	l_
	Lower index in index type. More...

Friends
bool	operator== (vectorL const &a, vectorL const &b)
	vectorL == vectorL More...
bool	operator!= (vectorL const &a, vectorL const &b)
	vectorL != vectorL More...
bool	operator< (vectorL const &a, vectorL const &b)
	vectorL < vectorL More...
bool	operator<= (vectorL const &a, vectorL const &b)
	vectorL <= vectorL More...
bool	operator>= (vectorL const &a, vectorL const &b)
	vectorL >= vectorL More...
bool	operator> (vectorL const &a, vectorL const &b)
	vectorL > vectorL More...
bool	operator== (vectorL const &a, super const &b)
	vectorL == std::vector More...
bool	operator!= (vectorL const &a, super const &b)
	vectorL != std::vector More...
bool	operator< (vectorL const &a, super const &b)
	vectorL < std::vector More...
bool	operator<= (vectorL const &a, super const &b)
	vectorL <= std::vector More...
bool	operator>= (vectorL const &a, super const &b)
	vectorL >= std::vector More...
bool	operator> (vectorL const &a, super const &b)
	vectorL > std::vector More...
bool	operator== (super const &a, vectorL const &b)
	std::vector == vectorL More...
bool	operator!= (super const &a, vectorL const &b)
	std::vector != vectorL More...
bool	operator< (super const &a, vectorL const &b)
	std::vector < vectorL More...
bool	operator<= (super const &a, vectorL const &b)
	std::vector <= vectorL More...
bool	operator>= (super const &a, vectorL const &b)
	std::vector >= vectorL More...
bool	operator> (super const &a, vectorL const &b)
	std::vector > vectorL More...
template<platform::SSize LL, typename AA >
void	swap (vectorL< LL, AA > &a, vectorL< LL, AA > &b)
	swap( vectorL, vectorL ) More...
template<platform::SSize LL, typename AA >
void	swap (vectorL< LL, AA > &a, std::vector< bool, AA > &b)
	swap( vectorL, std::vector ) More...
template<platform::SSize LL, typename AA >
void	swap (std::vector< bool, AA > &a, vectorL< LL, AA > &b)
	swap( std::vector, vectorL ) More...

Detailed Description

template<platform::SSize L, typename A>
class utility::vectorL< L, bool, A >

std::vector with L-based indexing: bool specialization

Note

• std::vector with L-based indexing and a few extras
• Lower index must be in the range of ssize_t
• Index type is std::size_t or ssize_t depending on sign of L
• When L is negative indexing operators can only reach the first max( ssize_t ) element and attempting to index beyond that will trigger an assertion failure
• Can construct and assign from std::vector and swap with std::vector
• Can compare with std::vector: compares contents ignoring indexes
• Can explicitly convert to std::vector
• Private inheritance from std::vector is safe here

Member Typedef Documentation

template<platform::SSize L, typename A >

typedef super::allocator_type utility::vectorL< L, bool, A >::Allocator

template<platform::SSize L, typename A >

typedef super::allocator_type utility::vectorL< L, bool, A >::allocator_type

template<platform::SSize L, typename A >

typedef super::const_iterator utility::vectorL< L, bool, A >::const_iterator

template<platform::SSize L, typename A >

typedef super::const_pointer utility::vectorL< L, bool, A >::const_pointer

template<platform::SSize L, typename A >

typedef super::const_reference utility::vectorL< L, bool, A >::const_reference

template<platform::SSize L, typename A >

typedef super::const_reverse_iterator utility::vectorL< L, bool, A >::const_reverse_iterator

template<platform::SSize L, typename A >

typedef super::const_iterator utility::vectorL< L, bool, A >::ConstIterator

template<platform::SSize L, typename A >

typedef super::const_pointer utility::vectorL< L, bool, A >::ConstPointer

template<platform::SSize L, typename A >

typedef super::const_reference utility::vectorL< L, bool, A >::ConstReference

template<platform::SSize L, typename A >

typedef super::const_reverse_iterator utility::vectorL< L, bool, A >::ConstReverseIterator

template<platform::SSize L, typename A >

typedef super::difference_type utility::vectorL< L, bool, A >::Difference

template<platform::SSize L, typename A >

typedef super::difference_type utility::vectorL< L, bool, A >::difference_type

template<platform::SSize L, typename A >

typedef super::iterator utility::vectorL< L, bool, A >::iterator

template<platform::SSize L, typename A >

typedef super::iterator utility::vectorL< L, bool, A >::Iterator

template<platform::SSize L, typename A >

typedef super::pointer utility::vectorL< L, bool, A >::pointer

template<platform::SSize L, typename A >

typedef super::pointer utility::vectorL< L, bool, A >::Pointer

template<platform::SSize L, typename A >

typedef super::reference utility::vectorL< L, bool, A >::reference

template<platform::SSize L, typename A >

typedef super::reference utility::vectorL< L, bool, A >::Reference

template<platform::SSize L, typename A >

typedef super::reverse_iterator utility::vectorL< L, bool, A >::reverse_iterator

template<platform::SSize L, typename A >

typedef super::reverse_iterator utility::vectorL< L, bool, A >::ReverseIterator

template<platform::SSize L, typename A >

typedef super::size_type utility::vectorL< L, bool, A >::Size

template<platform::SSize L, typename A >

typedef super::size_type utility::vectorL< L, bool, A >::size_type

template<platform::SSize L, typename A >

typedef platform::SSize utility::vectorL< L, bool, A >::SSize

template<platform::SSize L, typename A >

typedef platform::SSize utility::vectorL< L, bool, A >::ssize_type

template<platform::SSize L, typename A >

typedef std::vector< bool, A > utility::vectorL< L, bool, A >::super

private

template<platform::SSize L, typename A >

typedef super::value_type utility::vectorL< L, bool, A >::Value

template<platform::SSize L, typename A >

typedef super::value_type utility::vectorL< L, bool, A >::value_type

Constructor & Destructor Documentation

template<platform::SSize L, typename A >

utility::vectorL< L, bool, A >::vectorL ( allocator_type const &  alloc = allocator_type() )

inlineexplicit

Default constructor.

template<platform::SSize L, typename A >

utility::vectorL< L, bool, A >::vectorL ( vectorL< L, bool, A > const &  v )

inline

Copy constructor.

template<platform::SSize L, typename A >

template<ssize_type L_, typename T_ , typename A_ >

utility::vectorL< L, bool, A >::vectorL ( vectorL< L_, T_, A_ > const &  v )

inline

Assignable copy constructor.

template<platform::SSize L, typename A >

utility::vectorL< L, bool, A >::vectorL ( super const &  v )

inlineexplicit

std::vector constructor

template<platform::SSize L, typename A >

template<typename T_ , typename A_ >

utility::vectorL< L, bool, A >::vectorL ( std::vector< T_, A_ > const &  v )

inlineexplicit

Assignable std::vector constructor.

template<platform::SSize L, typename A >

utility::vectorL< L, bool, A >::vectorL ( size_type const  num )

inlineexplicit

Size constructor.

template<platform::SSize L, typename A >

utility::vectorL< L, bool, A >::vectorL ( size_type const  num, value_type const &  value, allocator_type const &  alloc = allocator_type()  )

inline

Uniform value constructor.

template<platform::SSize L, typename A >

template<typename InputIterator >

utility::vectorL< L, bool, A >::vectorL ( InputIterator const  beg, InputIterator const  end, allocator_type const &  alloc = allocator_type()  )

inline

Iterator range constructor.

template<platform::SSize L, typename A >

utility::vectorL< L, bool, A >::vectorL ( vectorL< L, bool, A > &&  v )

inline

C++11 Move constructor.

template<platform::SSize L, typename A >

utility::vectorL< L, bool, A >::vectorL ( super &&  v )

inlineexplicit

C++11 std::vector move constructor.

template<platform::SSize L, typename A >

utility::vectorL< L, bool, A >::vectorL ( std::initializer_list< bool >  init, const A &  alloc = A()  )

inline

C++11 initializer list constructor.

template<platform::SSize L, typename A >

virtual utility::vectorL< L, bool, A >::~vectorL ( )

inlinevirtual

Destructor.

Member Function Documentation

template<platform::SSize L, typename A >

const_reference utility::vectorL< L, bool, A >::at ( index_type const  i ) const

inline

vectorL.at( i ) const

References debug_assert, and utility::vectorL< SSize, T, A >::l_.

template<platform::SSize L, typename A >

reference utility::vectorL< L, bool, A >::at ( index_type const  i )

inline

vectorL.at( i )

References debug_assert, and utility::vectorL< SSize, T, A >::l_.

template<platform::SSize L, typename A >

bool utility::vectorL< L, bool, A >::has ( index_type const  i ) const

inline

Has an element with an index?

References utility::vectorL< SSize, T, A >::l_, and amino_acids::size.

template<platform::SSize L, typename A >

bool utility::vectorL< L, bool, A >::has_value ( bool const &  t ) const

inline

useful function – was commented out previously due, I think, to a conflict with has() in OptionKeys! Now renamed to has_value().

References begin, and basic::options::OptionKeys::cutoutdomain::end.

template<platform::SSize L, typename A >

vectorL< L, bool, A > utility::vectorL< L, bool, A >::invert ( ) const

inline

Inversion operator.

template<platform::SSize L, typename A >

index_type utility::vectorL< L, bool, A >::l ( ) const

inline

Lower index.

References utility::vectorL< SSize, T, A >::l_.

template<platform::SSize L, typename A >

vectorL& utility::vectorL< L, bool, A >::operator= ( vectorL< L, bool, A > const &  v )

inline

Copy assignment.

template<platform::SSize L, typename A >

template<ssize_type L_, typename T_ , typename A_ >

vectorL& utility::vectorL< L, bool, A >::operator= ( vectorL< L_, T_, A_ > const &  v )

inline

Assignable copy assignment.

template<platform::SSize L, typename A >

vectorL& utility::vectorL< L, bool, A >::operator= ( super const &  v )

inline

std::vector assignment

template<platform::SSize L, typename A >

template<typename T_ , typename A_ >

vectorL& utility::vectorL< L, bool, A >::operator= ( std::vector< T_, A_ > const &  v )

inline

Assignable std::vector assignment.

template<platform::SSize L, typename A >

const_reference utility::vectorL< L, bool, A >::operator[] ( index_type const  i ) const

inline

vectorL[ i ] const

References debug_assert, utility::vectorL< SSize, T, A >::l_, and amino_acids::size.

template<platform::SSize L, typename A >

reference utility::vectorL< L, bool, A >::operator[] ( index_type const  i )

inline

vectorL[ i ]

References debug_assert, utility::vectorL< SSize, T, A >::l_, and amino_acids::size.

template<platform::SSize L, typename A >

void utility::vectorL< L, bool, A >::shrink ( )

inline

Shrink the index map to remove unused capacity.

References amino_acids::size, and utility::vectorL< SSize, T, A >::vectorL().

template<platform::SSize L, typename A >

void utility::vectorL< L, bool, A >::swap ( vectorL< L, bool, A > &  v )

inline

swap( vectorL )

References swap().

template<platform::SSize L, typename A >

index_type utility::vectorL< L, bool, A >::u ( ) const

inline

Upper index.

References debug_assert, basic::options::OptionKeys::score::empty, utility::vectorL< SSize, T, A >::l_, and amino_acids::size.

template<platform::SSize L, typename A >

super const& utility::vectorL< L, bool, A >::vector ( ) const

inline

std::vector const explicit conversion

template<platform::SSize L, typename A >

super& utility::vectorL< L, bool, A >::vector ( )

inline

std::vector explicit conversion

Friends And Related Function Documentation

template<platform::SSize L, typename A >

bool operator!= ( vectorL< L, bool, A > const &  a, vectorL< L, bool, A > const &  b  )

friend

vectorL != vectorL

template<platform::SSize L, typename A >

bool operator!= ( vectorL< L, bool, A > const &  a, super const &  b  )

friend

vectorL != std::vector

template<platform::SSize L, typename A >

bool operator!= ( super const &  a, vectorL< L, bool, A > const &  b  )

friend

std::vector != vectorL

template<platform::SSize L, typename A >

bool operator< ( vectorL< L, bool, A > const &  a, vectorL< L, bool, A > const &  b  )

friend

vectorL < vectorL

template<platform::SSize L, typename A >

bool operator< ( vectorL< L, bool, A > const &  a, super const &  b  )

friend

vectorL < std::vector

template<platform::SSize L, typename A >

bool operator< ( super const &  a, vectorL< L, bool, A > const &  b  )

friend

std::vector < vectorL

template<platform::SSize L, typename A >

bool operator<= ( vectorL< L, bool, A > const &  a, vectorL< L, bool, A > const &  b  )

friend

vectorL <= vectorL

template<platform::SSize L, typename A >

bool operator<= ( vectorL< L, bool, A > const &  a, super const &  b  )

friend

vectorL <= std::vector

template<platform::SSize L, typename A >

bool operator<= ( super const &  a, vectorL< L, bool, A > const &  b  )

friend

std::vector <= vectorL

template<platform::SSize L, typename A >

bool operator== ( vectorL< L, bool, A > const &  a, vectorL< L, bool, A > const &  b  )

friend

vectorL == vectorL

template<platform::SSize L, typename A >

bool operator== ( vectorL< L, bool, A > const &  a, super const &  b  )

friend

vectorL == std::vector

template<platform::SSize L, typename A >

bool operator== ( super const &  a, vectorL< L, bool, A > const &  b  )

friend

std::vector == vectorL

template<platform::SSize L, typename A >

bool operator> ( vectorL< L, bool, A > const &  a, vectorL< L, bool, A > const &  b  )

friend

vectorL > vectorL

template<platform::SSize L, typename A >

bool operator> ( vectorL< L, bool, A > const &  a, super const &  b  )

friend

vectorL > std::vector

template<platform::SSize L, typename A >

bool operator> ( super const &  a, vectorL< L, bool, A > const &  b  )

friend

std::vector > vectorL

template<platform::SSize L, typename A >

bool operator>= ( vectorL< L, bool, A > const &  a, vectorL< L, bool, A > const &  b  )

friend

vectorL >= vectorL

template<platform::SSize L, typename A >

bool operator>= ( vectorL< L, bool, A > const &  a, super const &  b  )

friend

vectorL >= std::vector

template<platform::SSize L, typename A >

bool operator>= ( super const &  a, vectorL< L, bool, A > const &  b  )

friend

std::vector >= vectorL

template<platform::SSize L, typename A >

template<platform::SSize LL, typename AA >

void swap ( vectorL< LL, AA > &  a, vectorL< LL, AA > &  b  )

friend

swap( vectorL, vectorL )

template<platform::SSize L, typename A >

template<platform::SSize LL, typename AA >

void swap ( vectorL< LL, AA > &  a, std::vector< bool, AA > &  b  )

friend

swap( vectorL, std::vector )

template<platform::SSize L, typename A >

template<platform::SSize LL, typename AA >

void swap ( std::vector< bool, AA > &  a, vectorL< LL, AA > &  b  )

friend

swap( std::vector, vectorL )

Member Data Documentation

template<platform::SSize L, typename A >

vectorL< L, bool, A >::index_type const utility::vectorL< L, bool, A >::l_

staticprivate

Lower index in index type.

template<platform::SSize L, typename A >

typedef utility::vectorL< L, bool, A >::vectorL_IndexSelector< L > = 0 >::index_type index_type

---

The documentation for this class was generated from the following file:

• src/utility/vectorL_bool.hh