attach_observer_to_last_accepted_conformation(ConformationObserver &obs) | protocols::moves::MonteCarlo | |
attach_observer_to_last_accepted_pose(PoseObserver &obs) | protocols::moves::MonteCarlo | |
attach_observer_to_lowest_score_conformation(ConformationObserver &obs) | protocols::moves::MonteCarlo | |
attach_observer_to_lowest_score_pose(PoseObserver &obs) | protocols::moves::MonteCarlo | |
autotemp_accept() | protocols::moves::MonteCarlo | protected |
autotemp_reject() | protocols::moves::MonteCarlo | protected |
boltzmann(Pose &pose, std::string const &move_type="unk", core::Real const proposal_density_ratio=1, core::Real const inner_score_delta_over_temperature=0) override | protocols::moves::ReplicaExchangeMC | virtual |
protocols::moves::MonteCarlo::boltzmann(core::Real score, std::string const &move_type="unk", core::Real const proposal_density_ratio=1, core::Real const inner_score_delta_over_temperature=0, bool check_lowest_score=true) | protocols::moves::MonteCarlo | virtual |
protocols::moves::MonteCarlo::boltzmann(core::Real score, Pose &pose, std::string const &move_type="unk", core::Real const proposal_density_ratio=1, core::Real const inner_score_delta_over_temperature=0, bool check_lowest_score=true) | protocols::moves::MonteCarlo | virtual |
build_temperature_list(const double *elist) | protocols::moves::ReplicaExchangeMC | |
change_weight(core::scoring::ScoreType const &t, Real const &setting) | protocols::moves::MonteCarlo | |
check_frequency() const | protocols::moves::MonteCarlo | inline |
clear_poses() | protocols::moves::MonteCarlo | |
clone() | protocols::moves::MonteCarlo | inlinevirtual |
eval_lowest_score_pose(Pose &pose, bool score_pose=true, bool update_stats=false, std::string const &move_type="unk") | protocols::moves::MonteCarlo | |
evaluate_convergence_checks(core::pose::Pose const &pose, bool reject, bool final) | protocols::moves::MonteCarlo | protected |
exchange_schedule | protocols::moves::ReplicaExchangeMC | private |
get_update_boinc() const | protocols::moves::MonteCarlo | inline |
heat_after_cycles() const | protocols::moves::MonteCarlo | inline |
init() | protocols::moves::ReplicaExchangeMC | |
last_accept() const | protocols::moves::MonteCarlo | inline |
last_accepted_pose() const | protocols::moves::MonteCarlo | inline |
last_accepted_pose_non_const() | protocols::moves::MonteCarlo | inlineprotected |
last_accepted_score() const | protocols::moves::MonteCarlo | |
last_energylist | protocols::moves::ReplicaExchangeMC | private |
last_score() const | protocols::moves::MonteCarlo | |
lowest_score() const | protocols::moves::MonteCarlo | |
lowest_score_pose() const | protocols::moves::MonteCarlo | inline |
mc_accepted() const | protocols::moves::MonteCarlo | |
mc_accepted_string() const | protocols::moves::MonteCarlo | |
MonteCarlo(MonteCarlo const &) | protocols::moves::MonteCarlo | |
MonteCarlo(Pose const &init_pose, ScoreFunction const &scorefxn, Real const temperature) | protocols::moves::MonteCarlo | |
MonteCarlo(ScoreFunction const &scorefxn, Real const temperature) | protocols::moves::MonteCarlo | |
nreplica_frequency_ | protocols::moves::ReplicaExchangeMC | private |
ntrials_ | protocols::moves::ReplicaExchangeMC | private |
Parent typedef | protocols::moves::ReplicaExchangeMC | |
Pose typedef | protocols::moves::MonteCarlo | |
PoseCOP typedef | protocols::moves::MonteCarlo | |
PoseOP typedef | protocols::moves::MonteCarlo | |
push_back(moves::MonteCarloExceptionConvergeOP) | protocols::moves::MonteCarlo | |
rank_ | protocols::moves::ReplicaExchangeMC | private |
Real typedef | protocols::moves::MonteCarlo | |
recover_low(Pose &pose) | protocols::moves::MonteCarlo | |
ReplicaExchangeMC(Pose const &init_pose, ScoreFunction const &scorefxn, utility::vector1< core::Real > const &tlist, core::Size nint) | protocols::moves::ReplicaExchangeMC | |
ReplicaExchangeMC(ScoreFunction const &scorefxn, utility::vector1< core::Real > const &tlist, core::Size nint) | protocols::moves::ReplicaExchangeMC | |
reset(Pose const &pose) | protocols::moves::MonteCarlo | virtual |
reset_counters() | protocols::moves::MonteCarlo | |
reset_scorefxn(Pose const &init_pose, ScoreFunction const &scorefxn) | protocols::moves::MonteCarlo | |
score_function(ScoreFunction const &scorefxn) | protocols::moves::MonteCarlo | virtual |
score_function() const | protocols::moves::MonteCarlo | |
ScoreFunction typedef | protocols::moves::MonteCarlo | |
ScoreFunctionCOP typedef | protocols::moves::MonteCarlo | |
ScoreFunctionOP typedef | protocols::moves::MonteCarlo | |
set_autotemp(bool const setting, core::Real const quench_temp) | protocols::moves::MonteCarlo | |
set_heat_after_cycles(core::Size setting) | protocols::moves::MonteCarlo | inline |
set_last_accepted(core::Real score) | protocols::moves::MonteCarlo | inline |
set_last_accepted_pose(Pose const &pose) | protocols::moves::MonteCarlo | |
set_last_accepted_pose(core::pose::Pose const &pose, core::Real score) | protocols::moves::MonteCarlo | |
set_last_accepted_score(core::Real score) | protocols::moves::MonteCarlo | inlineprotected |
set_last_score(core::Real score) | protocols::moves::MonteCarlo | |
set_lowest(core::Real score) | protocols::moves::MonteCarlo | inline |
set_lowest_score_pose(core::pose::Pose const &pose) | protocols::moves::MonteCarlo | |
set_lowest_score_pose(core::pose::Pose const &pose, core::Real score) | protocols::moves::MonteCarlo | |
set_mc_accepted(MCA value) | protocols::moves::MonteCarlo | inlineprotected |
set_temperature(Real const temp) | protocols::moves::MonteCarlo | virtual |
set_total_score_last_considered(core::Real score) | protocols::moves::MonteCarlo | inline |
set_update_boinc(bool setting) | protocols::moves::MonteCarlo | inline |
show_counters() const | protocols::moves::MonteCarlo | |
show_scores() const | protocols::moves::MonteCarlo | |
show_state() const | protocols::moves::MonteCarlo | |
Size typedef | protocols::moves::ReplicaExchangeMC | |
size_ | protocols::moves::ReplicaExchangeMC | private |
T_ndx | protocols::moves::ReplicaExchangeMC | private |
T_rev | protocols::moves::ReplicaExchangeMC | private |
T_tag | protocols::moves::ReplicaExchangeMC | private |
temperature() const | protocols::moves::MonteCarlo | inline |
Tlist_ | protocols::moves::ReplicaExchangeMC | private |
total_score_of_last_considered_pose() const | protocols::moves::MonteCarlo | inline |
total_trials() const | protocols::moves::MonteCarlo | |
~MonteCarlo() override | protocols::moves::MonteCarlo | |
~ReplicaExchangeMC() override | protocols::moves::ReplicaExchangeMC | |