|
| ReplicaExchangeMC (Pose const &init_pose, ScoreFunction const &scorefxn, utility::vector1< core::Real > const &tlist, core::Size nint) |
|
| ReplicaExchangeMC (ScoreFunction const &scorefxn, utility::vector1< core::Real > const &tlist, core::Size nint) |
|
void | init () |
|
| ~ReplicaExchangeMC () override |
|
void | build_temperature_list (const double *elist) |
|
bool | boltzmann (Pose &pose, std::string const &move_type="unk", core::Real const proposal_density_ratio=1, core::Real const inner_score_delta_over_temperature=0) override |
| Applies the Metropolis Criterion on pose based on the ScoreFunction, temperature, and the last accepted pose. This method evaluates the change in score, compares the trial pose to the last accepted pose, and updates the pose structure and simulation statistics appropriately. More...
|
|
| MonteCarlo (MonteCarlo const &) |
| Copy constructor. More...
|
|
| MonteCarlo (Pose const &init_pose, ScoreFunction const &scorefxn, Real const temperature) |
| Constructs a useable MonteCarlo object. More...
|
|
| MonteCarlo (ScoreFunction const &scorefxn, Real const temperature) |
| Constructor without Pose – call reset(pose) before first use. More...
|
|
| ~MonteCarlo () override |
| Empty destructor in C++ file to reduce number of necessary includes. More...
|
|
virtual MonteCarloOP | clone () |
|
void | reset_scorefxn (Pose const &init_pose, ScoreFunction const &scorefxn) |
| Resets the ScoreFunction. More...
|
|
void | change_weight (core::scoring::ScoreType const &t, Real const &setting) |
| Change the weight on a score term in the object's scorefunction. Useful when we don't want to reset the whole scorefunction during an annealing step. More...
|
|
virtual void | set_temperature (Real const temp) |
| Sets the temperature value used in the Metropolis Criterion to <temp> More...
|
|
Real | temperature () const |
| Returns the temperature value used in the Metropolis Criterion. More...
|
|
void | set_autotemp (bool const setting, core::Real const quench_temp) |
| Sets autotemp to quench_temp example(s): See also: MonteCarlo MonteCarlo.autotemp MonteCarlo.show_state. More...
|
|
virtual bool | boltzmann (core::Real score, std::string const &move_type="unk", core::Real const proposal_density_ratio=1, core::Real const inner_score_delta_over_temperature=0, bool check_lowest_score=true) |
| Applies the Metropolis Criterion on the inputted pose based on the supplied score delta. More...
|
|
virtual bool | boltzmann (core::Real score, Pose &pose, std::string const &move_type="unk", core::Real const proposal_density_ratio=1, core::Real const inner_score_delta_over_temperature=0, bool check_lowest_score=true) |
| Applies the Metropolis Criterion on the inputted pose based on the supplied score delta. Updates the Pose Structure accordingly. More...
|
|
virtual void | reset (Pose const &pose) |
| Sets lowest score pose and last accepted pose to the score of <pose> More...
|
|
void | set_last_accepted_pose (Pose const &pose) |
| Sets the last accepted pose to the score of <pose> More...
|
|
void | set_last_accepted_pose (core::pose::Pose const &pose, core::Real score) |
| Sets the last accepted pose and last accepted score. More...
|
|
void | set_lowest_score_pose (core::pose::Pose const &pose) |
|
void | set_lowest_score_pose (core::pose::Pose const &pose, core::Real score) |
|
void | set_last_score (core::Real score) |
| Set the last score. More...
|
|
Pose const & | last_accepted_pose () const |
| Returns the last accepted pose. More...
|
|
Pose const & | lowest_score_pose () const |
| Returns the lowest score pose encountered. More...
|
|
bool | eval_lowest_score_pose (Pose &pose, bool score_pose=true, bool update_stats=false, std::string const &move_type="unk") |
| Compares score of <pose> to the lowest score found. If lower, sets the current lowest score pose and lowest score. Use internal pose energies if score_pose is false. Used to evaluate lowest score without boltzmann. Does not change pose structure. More...
|
|
template<typename ConformationObserver > |
void | attach_observer_to_last_accepted_conformation (ConformationObserver &obs) |
| attach observer to last accepted conformation More...
|
|
template<typename ConformationObserver > |
void | attach_observer_to_lowest_score_conformation (ConformationObserver &obs) |
| attach observer to lowest score conformation More...
|
|
template<typename PoseObserver > |
void | attach_observer_to_last_accepted_pose (PoseObserver &obs) |
| attach observer to last accepted pose More...
|
|
template<typename PoseObserver > |
void | attach_observer_to_lowest_score_pose (PoseObserver &obs) |
| attach observer to lowest score pose More...
|
|
void | recover_low (Pose &pose) |
| Sets the input <pose> and last accepted pose to the lowest score pose. More...
|
|
virtual void | score_function (ScoreFunction const &scorefxn) |
| Sets the ScoreFunction to <scorefxn> , re-scores last accepted pose and lowest score pose. More...
|
|
ScoreFunction const & | score_function () const |
| Returns the MonteCarlo ScoreFunction. More...
|
|
void | show_scores () const |
| Displays the last accepted score and the lowest score. More...
|
|
void | reset_counters () |
| Resets the mover counters. More...
|
|
void | show_state () const |
| Displays the entire MonteCarlo state temperature, scores, annealing settings, move statistics, move counters (show_counters) More...
|
|
void | show_counters () const |
| Displays the number of trials performed, fraction of trial moves accepted, and the average energy drop per accepted trial by mover types applied (unknown movers or perturbations are listed as "unktrials") More...
|
|
Size | total_trials () const |
| Set the counter to be used for this simulation. More...
|
|
Real | last_accepted_score () const |
| Manually record that a move was attempted. More...
|
|
Real | last_score () const |
| Returns the score value of the last score. More...
|
|
Real | lowest_score () const |
| Returns the score value of the lowest score pose encountered. More...
|
|
MCA | mc_accepted () const |
| Returns mc_accepted, informative of the last move applied. More...
|
|
std::string | mc_accepted_string () const |
| Returns mc_accepted as a human-readable string, informative of the last move applied. More...
|
|
void | clear_poses () |
| Removes last accepted pose and lowest score pose. More...
|
|
void | set_update_boinc (bool setting) |
| no brief for now More...
|
|
bool | get_update_boinc () const |
|
Real | total_score_of_last_considered_pose () const |
|
core::Size | last_accept () const |
| Returns the number of trials since last acceptance. More...
|
|
core::Size | heat_after_cycles () const |
| no brief for now More...
|
|
void | set_heat_after_cycles (core::Size setting) |
| no brief for now More...
|
|
void | push_back (moves::MonteCarloExceptionConvergeOP) |
| no brief for now More...
|
|
Size | check_frequency () const |
|
void | set_total_score_last_considered (core::Real score) |
|
void | set_last_accepted (core::Real score) |
|
void | set_lowest (core::Real score) |
|