protocols::match::output::OutputWriter Class Reference

#include <OutputWriter.hh>

Inheritance diagram for protocols::match::output::OutputWriter:

Public Member Functions
	OutputWriter ()
virtual	~OutputWriter ()
protocols::toolbox::match_enzdes_util::EnzConstraintIOCOP	cst_io () const
virtual void	record_match (match const &m, MatchEvaluatorOP evaluator, MatchScoreWriterOP match_score_writer)=0
virtual void	record_match (match_dspos1 const &m)=0
	evaluator and score writer are not passed in because single-downstream-position match currently have no way of being evaluated More...
void	determine_redundant_upstream_matchres (match_dspos1 const &m, std::map< core::Size, core::Size > &redundant_upstream_res) const
	determine if any upstream res are at the same scaffold position, i.e. if one of them is a backbone interaction the redundant_upstream_res map is a mapping from the redundant geometric constraint id of the redundant residue to the geomcst_id of the "nonredundant" res i.e. if cstres 1 happens to be a cys at position 10 and cstres 3 is a gly at position 10 (and it's backbone is used in satisfying constraint 3), the mapping will contain the 3,1 pair. More...
virtual void	prepare_for_output_writing ()
virtual void	end_output_writing ()
virtual void	initialize_from_matcher_task (MatcherTaskCOP mtask)

Private Attributes
protocols::toolbox::match_enzdes_util::EnzConstraintIOCOP	cst_io_

Constructor & Destructor Documentation

protocols::match::output::OutputWriter::OutputWriter

(

)

protocols::match::output::OutputWriter::~OutputWriter ( )

virtualdefault

Member Function Documentation

protocols::toolbox::match_enzdes_util::EnzConstraintIOCOP protocols::match::output::OutputWriter::cst_io

(

)

const

References cst_io_.

void protocols::match::output::OutputWriter::determine_redundant_upstream_matchres	(	match_dspos1 const &	m,
		std::map< core::Size, core::Size > &	redundant_upstream_res
	)		const

determine if any upstream res are at the same scaffold position, i.e. if one of them is a backbone interaction the redundant_upstream_res map is a mapping from the redundant geometric constraint id of the redundant residue to the geomcst_id of the "nonredundant" res i.e. if cstres 1 happens to be a cys at position 10 and cstres 3 is a gly at position 10 (and it's backbone is used in satisfying constraint 3), the mapping will contain the 3,1 pair.

References cst_io_, core::id::to_string(), and protocols::match::match_dspos1::upstream_hits.

Referenced by protocols::match::output::PoseMatchOutputWriter::insert_match_into_pose(), protocols::match::output::PDBWriter::record_match(), and protocols::match::output::CloudPDBWriter::write_match_groups().

virtual void protocols::match::output::OutputWriter::end_output_writing ( )

inlinevirtual

Reimplemented in protocols::match::output::PoseMatchOutputWriter, and protocols::match::output::CloudPDBWriter.

void protocols::match::output::OutputWriter::initialize_from_matcher_task ( MatcherTaskCOP  mtask )

virtual

Reimplemented in protocols::match::output::PDBWriter.

References cst_io_.

Referenced by protocols::match::output::PDBWriter::initialize_from_matcher_task().

virtual void protocols::match::output::OutputWriter::prepare_for_output_writing ( )

inlinevirtual

Reimplemented in protocols::match::output::CloudPDBWriter, and protocols::match::output::PDBWriter.

virtual void protocols::match::output::OutputWriter::record_match ( match const &  m, MatchEvaluatorOP  evaluator, MatchScoreWriterOP  match_score_writer  )

pure virtual

Implemented in protocols::match::output::CloudPDBWriter, protocols::match::output::PDBWriter, and protocols::match::output::WriteKinemageOutputter.

virtual void protocols::match::output::OutputWriter::record_match ( match_dspos1 const &  m )

pure virtual

evaluator and score writer are not passed in because single-downstream-position match currently have no way of being evaluated

Implemented in protocols::match::output::CloudPDBWriter, protocols::match::output::PDBWriter, and protocols::match::output::WriteKinemageOutputter.

Member Data Documentation

protocols::toolbox::match_enzdes_util::EnzConstraintIOCOP protocols::match::output::OutputWriter::cst_io_

private

Referenced by cst_io(), determine_redundant_upstream_matchres(), and initialize_from_matcher_task().

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The documentation for this class was generated from the following files:

• src/protocols/match/output/OutputWriter.hh
• src/protocols/match/output/OutputWriter.cc