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Rosetta
2019.12
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#include <JumpSetup.hh>
Classes | |
class | JumpDef |
Public Types | |
typedef utility::vector1 < JumpDef >::const_iterator | const_iterator |
typedef utility::vector1 < JumpDef >::iterator | iterator |
Public Member Functions | |
std::string | type_name () const override |
JumpSetup (Size total_residue) | |
void | add_jump (JumpDef const &jd) |
void | add_jump (Interval const &jump, Interval const &cut_reg) |
void | add_jump (core::Size js, core::Size je, core::Size crs, core::Size cre) |
core::Size | size () const |
const_iterator | begin () const |
const_iterator | end () const |
void | clear () |
void | read_file (std::string file) |
JumpSample | create_jump_sample () const override |
JumpSample | clean_jumps (JumpSample const &js) const override |
take from a given JumpSample only those Jumps, which could also have been created by create_jump_sample() More... | |
void | set_jump_sample (JumpSample const &jump_sample) |
core::Size | total_residue () const |
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~BaseJumpSetup () override | |
Automatically generated virtual destructor for class deriving directly from ReferenceCount. More... | |
virtual core::fragment::FragSetOP | generate_jump_frags (JumpSample const &, core::kinematics::MoveMap const &mm) const |
returns an ordered FragSet that is compatible with the JumpSample default: generate jumps from ss-library according to JumpSample More... | |
Private Attributes | |
utility::vector1< JumpDef > | jumps_ |
core::Size | total_residue_ |
JumpSample | jump_sample_ |
typedef utility::vector1< JumpDef >::const_iterator protocols::jumping::JumpSetup::const_iterator |
typedef utility::vector1< JumpDef >::iterator protocols::jumping::JumpSetup::iterator |
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inline |
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inline |
References jump_sample_, and jumps_.
Referenced by add_jump(), and protocols::jumping::JumpSelector::create_jump_sample().
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inline |
References add_jump(), and jump_sample_.
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inline |
References add_jump(), and jump_sample_.
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inline |
References jumps_.
Referenced by protocols::jumping::JumpSample::JumpSample().
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inlineoverridevirtual |
take from a given JumpSample only those Jumps, which could also have been created by create_jump_sample()
Implements protocols::jumping::BaseJumpSetup.
References hh_tr().
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inline |
References jumps_.
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inlineoverridevirtual |
Implements protocols::jumping::BaseJumpSetup.
References jump_sample_.
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inline |
References jumps_.
Referenced by protocols::jumping::JumpSample::JumpSample().
void protocols::jumping::JumpSetup::read_file | ( | std::string | file | ) |
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inline |
References jump_sample_.
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inline |
References jumps_.
Referenced by protocols::jumping::JumpSample::JumpSample().
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inline |
References total_residue_.
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inlineoverridevirtual |
Implements protocols::jumping::BaseJumpSetup.
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private |
Referenced by add_jump(), create_jump_sample(), and set_jump_sample().
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private |
Referenced by add_jump(), begin(), clear(), end(), and size().
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private |
Referenced by total_residue().