basic::options::OptionKeys::cm::hybridize Namespace Reference

Variables
BooleanOptionKey const	hybridize
IntegerVectorOptionKey const	starting_template
BooleanOptionKey const	realign_domains
BooleanOptionKey const	realign_domains_stage2
IntegerOptionKey const	add_non_init_chunks
RealOptionKey const	stage1_increase_cycles
RealOptionKey const	stage2_increase_cycles
RealOptionKey const	stage2min_increase_cycles
RealOptionKey const	stage1_probability
BooleanOptionKey const	skip_stage2
BooleanOptionKey const	no_global_frame
BooleanOptionKey const	linmin_only
IntegerOptionKey const	relax
RealOptionKey const	frag_weight_aligned
IntegerOptionKey const	max_registry_shift
RealOptionKey const	frag_1mer_insertion_weight
RealOptionKey const	small_frag_insertion_weight
RealOptionKey const	big_frag_insertion_weight
BooleanOptionKey const	auto_frag_insertion_weight
IntegerOptionKey const	stage1_1_cycles
IntegerOptionKey const	stage1_2_cycles
IntegerOptionKey const	stage1_3_cycles
IntegerOptionKey const	stage1_4_cycles
RealOptionKey const	stage2_temperature
StringOptionKey const	stage1_4_cenrot_score
BooleanOptionKey const	include_loop_ss_chunks

Variable Documentation

IntegerOptionKey const basic::options::OptionKeys::cm::hybridize::add_non_init_chunks

Referenced by add_rosetta_options_6().

BooleanOptionKey const basic::options::OptionKeys::cm::hybridize::auto_frag_insertion_weight

Referenced by add_rosetta_options_6().

RealOptionKey const basic::options::OptionKeys::cm::hybridize::big_frag_insertion_weight

Referenced by add_rosetta_options_6().

RealOptionKey const basic::options::OptionKeys::cm::hybridize::frag_1mer_insertion_weight

Referenced by add_rosetta_options_6().

RealOptionKey const basic::options::OptionKeys::cm::hybridize::frag_weight_aligned

Referenced by add_rosetta_options_6().

BooleanOptionKey const basic::options::OptionKeys::cm::hybridize::hybridize

Referenced by add_rosetta_options_6().

BooleanOptionKey const basic::options::OptionKeys::cm::hybridize::include_loop_ss_chunks

Referenced by add_rosetta_options_6().

BooleanOptionKey const basic::options::OptionKeys::cm::hybridize::linmin_only

Referenced by add_rosetta_options_6().

IntegerOptionKey const basic::options::OptionKeys::cm::hybridize::max_registry_shift

Referenced by add_rosetta_options_6().

BooleanOptionKey const basic::options::OptionKeys::cm::hybridize::no_global_frame

Referenced by add_rosetta_options_6().

BooleanOptionKey const basic::options::OptionKeys::cm::hybridize::realign_domains

Referenced by add_rosetta_options_6().

BooleanOptionKey const basic::options::OptionKeys::cm::hybridize::realign_domains_stage2

Referenced by add_rosetta_options_6().

IntegerOptionKey const basic::options::OptionKeys::cm::hybridize::relax

Referenced by add_rosetta_options_6().

BooleanOptionKey const basic::options::OptionKeys::cm::hybridize::skip_stage2

Referenced by add_rosetta_options_6().

RealOptionKey const basic::options::OptionKeys::cm::hybridize::small_frag_insertion_weight

Referenced by add_rosetta_options_6().

IntegerOptionKey const basic::options::OptionKeys::cm::hybridize::stage1_1_cycles

Referenced by add_rosetta_options_6().

IntegerOptionKey const basic::options::OptionKeys::cm::hybridize::stage1_2_cycles

Referenced by add_rosetta_options_6().

IntegerOptionKey const basic::options::OptionKeys::cm::hybridize::stage1_3_cycles

Referenced by add_rosetta_options_6().

StringOptionKey const basic::options::OptionKeys::cm::hybridize::stage1_4_cenrot_score

Referenced by add_rosetta_options_6().

IntegerOptionKey const basic::options::OptionKeys::cm::hybridize::stage1_4_cycles

Referenced by add_rosetta_options_6().

RealOptionKey const basic::options::OptionKeys::cm::hybridize::stage1_increase_cycles

Referenced by add_rosetta_options_6().

RealOptionKey const basic::options::OptionKeys::cm::hybridize::stage1_probability

Referenced by add_rosetta_options_6().

RealOptionKey const basic::options::OptionKeys::cm::hybridize::stage2_increase_cycles

Referenced by add_rosetta_options_6().

RealOptionKey const basic::options::OptionKeys::cm::hybridize::stage2_temperature

Referenced by add_rosetta_options_6().

RealOptionKey const basic::options::OptionKeys::cm::hybridize::stage2min_increase_cycles

Referenced by add_rosetta_options_6().

IntegerVectorOptionKey const basic::options::OptionKeys::cm::hybridize::starting_template

Referenced by add_rosetta_options_6().