fit_helix_in_map.cc File Reference

Fit a helix in a density map at a specific position. More...

#include <core/types.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/scoring/rms_util.hh>
#include <basic/options/option.hh>
#include <basic/options/option_macros.hh>
#include <protocols/viewer/viewers.hh>
#include <core/pose/Pose.hh>
#include <core/pose/rna/util.hh>
#include <core/pose/extra_pose_info_util.hh>
#include <core/init/init.hh>
#include <core/import_pose/pose_stream/PoseInputStream.hh>
#include <core/import_pose/pose_stream/PDBPoseInputStream.hh>
#include <core/import_pose/pose_stream/SilentFilePoseInputStream.hh>
#include <core/id/AtomID_Map.hh>
#include <core/pose/PDBInfo.hh>
#include <utility/vector1.hh>
#include <core/pose/annotated_sequence.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/conformation/Residue.hh>
#include <core/pose/util.tmpl.hh>
#include <protocols/rigid/RigidBodyMover.hh>
#include <iostream>
#include <string>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/edensity.OptionKeys.gen.hh>
#include <utility/excn/Exceptions.hh>
#include <basic/Tracer.hh>

Functions
void	fit_helix_in_map ()
void	align_helix ()
void *	my_main (void *)
int	main (int argc, char *argv[])

Variables
static basic::Tracer	TR ("apps.public.DRRAFTER.fit_helix_in_map")

Detailed Description

Fit a helix in a density map at a specific position.

Author

Kalli Kappel

Function Documentation

void align_helix

(

)

References basic::options::OptionKeys::chemical::chemical, basic::options::option, and options.

Referenced by my_main().

void fit_helix_in_map

(

)

References basic::options::OptionKeys::chemical::chemical, distance(), utility::options::OptionKeys::options::exit, numeric::random::gaussian(), basic::options::OptionKeys::relax::range::kT, make_symmdef_file_denovo::length, numeric::midpoint(), basic::options::OptionKeys::score::saxs::min_score, basic::options::option, options, basic::options::OptionKeys::legacy_sewing::repeat, numeric::random::rg(), erraser_single_res_analysis::score, amino_acids::size, basic::options::TR, numeric::random::uniform(), and numeric::random::RandomGenerator::uniform().

Referenced by my_main().

int main	(	int	argc,
		char *	argv[]
	)

References utility::options::OptionCollection::add_relevant(), utility::io::oc::cout, test.T009_Exceptions::e, basic::init(), utility::excn::Exception::msg(), my_main(), NEW_OPT, basic::options::option, options, basic::options::OptionKeys::in::file::s, and basic::options::OptionKeys::frags::scoring::scoring.

void* my_main

(

void *

)

References align_helix(), utility::options::OptionKeys::options::exit, fit_helix_in_map(), basic::options::option, and options.

Referenced by main().

Variable Documentation

basic::Tracer TR("apps.public.DRRAFTER.fit_helix_in_map")

static