basic::options::OptionKeys::score::rna Namespace Reference

Variables
BooleanOptionKey const	rna
StringOptionKey const	rna_base_pair_xy_filename
BooleanOptionKey const	disable_orientation_dependent_rna_ch_o_bonds
StringOptionKey const	rna_suite_potential
StringOptionKey const	suiteness_bonus
BooleanOptionKey const	rna_torsion_skip_chainbreak
BooleanOptionKey const	rna_chemical_shift_verbose
BooleanOptionKey const	rna_chemical_shift_larmord
StringOptionKey const	rna_chemical_shift_exp_data
StringOptionKey const	rna_chemical_shift_larmord_par
StringOptionKey const	rna_chemical_shift_larmord_wt
StringOptionKey const	rna_chemical_shift_larmord_ref
StringOptionKey const	rna_chemical_shift_larmord_nei
RealOptionKey const	rna_chemical_shift_larmord_cut
RealOptionKey const	rna_chemical_shift_larmord_beta
StringOptionKey const	rna_chemical_shift_H5_prime_mode
IntegerVectorOptionKey const	rna_chemical_shift_include_res
BooleanOptionKey const	DMS_separate_features
BooleanOptionKey const	DMS_careful_base_pair_classifier
RealOptionKey const	rna_chem_map_lores_weight
BooleanOptionKey const	use_2prime_OH_potential
BooleanOptionKey const	use_rna_chi_potential
BooleanOptionKey const	include_neighbor_base_stacks
BooleanOptionKey const	FA_low_res_rnp_scoring
RealOptionKey const	free_suite_bonus
RealOptionKey const	free_sugar_bonus
RealOptionKey const	free_2HOprime_bonus
RealOptionKey const	syn_G_potential_bonus
BooleanOptionKey const	rna_bulge_bonus_once_per_loop
RealOptionKey const	pack_phosphate_penalty

Variable Documentation

BooleanOptionKey const basic::options::OptionKeys::score::rna::disable_orientation_dependent_rna_ch_o_bonds

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::score::rna::DMS_careful_base_pair_classifier

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::score::rna::DMS_separate_features

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::score::rna::FA_low_res_rnp_scoring

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::score::rna::free_2HOprime_bonus

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::score::rna::free_sugar_bonus

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::score::rna::free_suite_bonus

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::score::rna::include_neighbor_base_stacks

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::score::rna::pack_phosphate_penalty

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::score::rna::rna

Referenced by add_rosetta_options_2().

StringOptionKey const basic::options::OptionKeys::score::rna::rna_base_pair_xy_filename

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::score::rna::rna_bulge_bonus_once_per_loop

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::score::rna::rna_chem_map_lores_weight

Referenced by add_rosetta_options_2(), and RNA_DeNovoJobQueen::initialize_scorefxn().

StringOptionKey const basic::options::OptionKeys::score::rna::rna_chemical_shift_exp_data

Referenced by add_rosetta_options_2().

StringOptionKey const basic::options::OptionKeys::score::rna::rna_chemical_shift_H5_prime_mode

Referenced by add_rosetta_options_2().

IntegerVectorOptionKey const basic::options::OptionKeys::score::rna::rna_chemical_shift_include_res

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::score::rna::rna_chemical_shift_larmord

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::score::rna::rna_chemical_shift_larmord_beta

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::score::rna::rna_chemical_shift_larmord_cut

Referenced by add_rosetta_options_2().

StringOptionKey const basic::options::OptionKeys::score::rna::rna_chemical_shift_larmord_nei

Referenced by add_rosetta_options_2().

StringOptionKey const basic::options::OptionKeys::score::rna::rna_chemical_shift_larmord_par

Referenced by add_rosetta_options_2().

StringOptionKey const basic::options::OptionKeys::score::rna::rna_chemical_shift_larmord_ref

Referenced by add_rosetta_options_2().

StringOptionKey const basic::options::OptionKeys::score::rna::rna_chemical_shift_larmord_wt

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::score::rna::rna_chemical_shift_verbose

Referenced by add_rosetta_options_2().

StringOptionKey const basic::options::OptionKeys::score::rna::rna_suite_potential

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::score::rna::rna_torsion_skip_chainbreak

Referenced by add_rosetta_options_2().

StringOptionKey const basic::options::OptionKeys::score::rna::suiteness_bonus

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::score::rna::syn_G_potential_bonus

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::score::rna::use_2prime_OH_potential

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::score::rna::use_rna_chi_potential

Referenced by add_rosetta_options_2().