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Rosetta
2020.11
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Rosetta
2020.11
|
Namespaces | |
| monte_carlo | |
| polar_hydrogens | |
| protein | |
| rna | |
Functions | |
| BooleanOptionKey const | stepwise ("stepwise") |
| StringVectorOptionKey const | s1 ("stepwise:s1") |
| StringVectorOptionKey const | s2 ("stepwise:s2") |
| StringVectorOptionKey const | silent1 ("stepwise:silent1") |
| StringVectorOptionKey const | silent2 ("stepwise:silent2") |
| StringVectorOptionKey const | tags1 ("stepwise:tags1") |
| StringVectorOptionKey const | tags2 ("stepwise:tags2") |
| IntegerVectorOptionKey const | slice_res1 ("stepwise:slice_res1") |
| IntegerVectorOptionKey const | slice_res2 ("stepwise:slice_res2") |
| IntegerVectorOptionKey const | input_res1 ("stepwise:input_res1") |
| IntegerVectorOptionKey const | input_res2 ("stepwise:input_res2") |
| BooleanOptionKey const | backbone_only1 ("stepwise:backbone_only1") |
| BooleanOptionKey const | backbone_only2 ("stepwise:backbone_only2") |
| IntegerVectorOptionKey const | fixed_res ("stepwise:fixed_res") |
| BooleanOptionKey const | test_encapsulation ("stepwise:test_encapsulation") |
| BooleanOptionKey const | choose_random ("stepwise:choose_random") |
| IntegerOptionKey const | num_random_samples ("stepwise:num_random_samples") |
| IntegerOptionKey const | max_tries_multiplier_for_ccd ("stepwise:max_tries_multiplier_for_ccd") |
| IntegerOptionKey const | num_pose_minimize ("stepwise:num_pose_minimize") |
| BooleanOptionKey const | atr_rep_screen ("stepwise:atr_rep_screen") |
| BooleanOptionKey const | atr_rep_screen_for_docking ("stepwise:atr_rep_screen_for_docking") |
| StringOptionKey const | align_pdb ("stepwise:align_pdb") |
| StringOptionKey const | new_align_pdb ("stepwise:new_align_pdb") |
| BooleanOptionKey const | enumerate ("stepwise:enumerate") |
| BooleanOptionKey const | preminimize ("stepwise:preminimize") |
| BooleanOptionKey const | skip_preminimize ("stepwise:skip_preminimize") |
| BooleanOptionKey const | minimize_waters ("stepwise:minimize_waters") |
| BooleanOptionKey const | test_all_moves ("stepwise:test_all_moves") |
| BooleanOptionKey const | new_move_selector ("stepwise:new_move_selector") |
| BooleanOptionKey const | dump ("stepwise:dump") |
| BooleanOptionKey const | VERBOSE ("stepwise:VERBOSE") |
| BooleanOptionKey const | use_green_packer ("stepwise:use_green_packer") |
| RealOptionKey const | rmsd_screen ("stepwise:rmsd_screen") |
| BooleanOptionKey const | skip_minimize ("stepwise:skip_minimize") |
| BooleanOptionKey const | virtualize_packable_moieties_in_screening_pose ("stepwise:virtualize_packable_moieties_in_screening_pose") |
| StringOptionKey const | minimizer_mode ("stepwise:minimizer_mode") |
| StringOptionKey const | sampler_silent_file ("stepwise:sampler_silent_file") |
| BooleanOptionKey const | superimpose_over_all ("stepwise:superimpose_over_all") |
| ResidueChainVectorOptionKey const | alignment_anchor_res ("stepwise:alignment_anchor_res") |
| StringVectorOptionKey const | move ("stepwise:move") |
| StringOptionKey const | min_type ("stepwise:min_type") |
| RealOptionKey const | min_tolerance ("stepwise:min_tolerance") |
| BooleanOptionKey const | output_minimized_pose_list ("stepwise:output_minimized_pose_list") |
| BooleanOptionKey const | virtualize_free_moieties_in_native ("stepwise:virtualize_free_moieties_in_native") |
| BooleanOptionKey const | output_cluster_size ("stepwise:output_cluster_size") |
| BooleanOptionKey const | lores ("stepwise:lores") |
| BooleanOptionKey const | verbose_sampler ("stepwise:verbose_sampler") |
| BooleanOptionKey const | pack_protein_side_chains ("stepwise:pack_protein_side_chains") |
| IntegerVectorOptionKey const | definitely_virtualize ("stepwise:definitely_virtualize") |
| BooleanOptionKey const | force_moving_res_for_erraser ("stepwise:force_moving_res_for_erraser") |
| BooleanOptionKey const | boltzmann_choice_post_enumerated_minimize ("stepwise:boltzmann_choice_post_enumerated_minimize") |
| StringOptionKey const stepwise::align_pdb | ( | "stepwise:align_pdb" | ) |
| ResidueChainVectorOptionKey const stepwise::alignment_anchor_res | ( | "stepwise:alignment_anchor_res" | ) |
| BooleanOptionKey const stepwise::atr_rep_screen | ( | "stepwise:atr_rep_screen" | ) |
| BooleanOptionKey const stepwise::atr_rep_screen_for_docking | ( | "stepwise:atr_rep_screen_for_docking" | ) |
| BooleanOptionKey const stepwise::backbone_only1 | ( | "stepwise:backbone_only1" | ) |
| BooleanOptionKey const stepwise::backbone_only2 | ( | "stepwise:backbone_only2" | ) |
| BooleanOptionKey const stepwise::boltzmann_choice_post_enumerated_minimize | ( | "stepwise:boltzmann_choice_post_enumerated_minimize" | ) |
| BooleanOptionKey const stepwise::choose_random | ( | "stepwise:choose_random" | ) |
| IntegerVectorOptionKey const stepwise::definitely_virtualize | ( | "stepwise:definitely_virtualize" | ) |
| BooleanOptionKey const stepwise::dump | ( | "stepwise:dump" | ) |
| BooleanOptionKey const stepwise::enumerate | ( | "stepwise:enumerate" | ) |
| IntegerVectorOptionKey const stepwise::fixed_res | ( | "stepwise:fixed_res" | ) |
| BooleanOptionKey const stepwise::force_moving_res_for_erraser | ( | "stepwise:force_moving_res_for_erraser" | ) |
| IntegerVectorOptionKey const stepwise::input_res1 | ( | "stepwise:input_res1" | ) |
| IntegerVectorOptionKey const stepwise::input_res2 | ( | "stepwise:input_res2" | ) |
| BooleanOptionKey const stepwise::lores | ( | "stepwise:lores" | ) |
| IntegerOptionKey const stepwise::max_tries_multiplier_for_ccd | ( | "stepwise:max_tries_multiplier_for_ccd" | ) |
| RealOptionKey const stepwise::min_tolerance | ( | "stepwise:min_tolerance" | ) |
| StringOptionKey const stepwise::min_type | ( | "stepwise:min_type" | ) |
| BooleanOptionKey const stepwise::minimize_waters | ( | "stepwise:minimize_waters" | ) |
| StringOptionKey const stepwise::minimizer_mode | ( | "stepwise:minimizer_mode" | ) |
| StringVectorOptionKey const stepwise::move | ( | "stepwise:move" | ) |
| StringOptionKey const stepwise::new_align_pdb | ( | "stepwise:new_align_pdb" | ) |
| BooleanOptionKey const stepwise::new_move_selector | ( | "stepwise:new_move_selector" | ) |
| IntegerOptionKey const stepwise::num_pose_minimize | ( | "stepwise:num_pose_minimize" | ) |
| IntegerOptionKey const stepwise::num_random_samples | ( | "stepwise:num_random_samples" | ) |
| BooleanOptionKey const stepwise::output_cluster_size | ( | "stepwise:output_cluster_size" | ) |
| BooleanOptionKey const stepwise::output_minimized_pose_list | ( | "stepwise:output_minimized_pose_list" | ) |
| BooleanOptionKey const stepwise::pack_protein_side_chains | ( | "stepwise:pack_protein_side_chains" | ) |
| BooleanOptionKey const stepwise::preminimize | ( | "stepwise:preminimize" | ) |
| RealOptionKey const stepwise::rmsd_screen | ( | "stepwise:rmsd_screen" | ) |
| StringVectorOptionKey const stepwise::s1 | ( | "stepwise:s1" | ) |
| StringVectorOptionKey const stepwise::s2 | ( | "stepwise:s2" | ) |
| StringOptionKey const stepwise::sampler_silent_file | ( | "stepwise:sampler_silent_file" | ) |
| StringVectorOptionKey const stepwise::silent1 | ( | "stepwise:silent1" | ) |
| StringVectorOptionKey const stepwise::silent2 | ( | "stepwise:silent2" | ) |
| BooleanOptionKey const stepwise::skip_minimize | ( | "stepwise:skip_minimize" | ) |
| BooleanOptionKey const stepwise::skip_preminimize | ( | "stepwise:skip_preminimize" | ) |
| IntegerVectorOptionKey const stepwise::slice_res1 | ( | "stepwise:slice_res1" | ) |
| IntegerVectorOptionKey const stepwise::slice_res2 | ( | "stepwise:slice_res2" | ) |
| BooleanOptionKey const stepwise::stepwise | ( | "stepwise" | ) |
| BooleanOptionKey const stepwise::superimpose_over_all | ( | "stepwise:superimpose_over_all" | ) |
| StringVectorOptionKey const stepwise::tags1 | ( | "stepwise:tags1" | ) |
| StringVectorOptionKey const stepwise::tags2 | ( | "stepwise:tags2" | ) |
| BooleanOptionKey const stepwise::test_all_moves | ( | "stepwise:test_all_moves" | ) |
| BooleanOptionKey const stepwise::test_encapsulation | ( | "stepwise:test_encapsulation" | ) |
| BooleanOptionKey const stepwise::use_green_packer | ( | "stepwise:use_green_packer" | ) |
| BooleanOptionKey const stepwise::VERBOSE | ( | "stepwise:VERBOSE" | ) |
| BooleanOptionKey const stepwise::verbose_sampler | ( | "stepwise:verbose_sampler" | ) |
| BooleanOptionKey const stepwise::virtualize_free_moieties_in_native | ( | "stepwise:virtualize_free_moieties_in_native" | ) |
| BooleanOptionKey const stepwise::virtualize_packable_moieties_in_screening_pose | ( | "stepwise:virtualize_packable_moieties_in_screening_pose" | ) |
1.8.7