protocols::rotamer_recovery::RRReporterHuman Class Reference

The reporting functionality for the rotamer recovery test in a human readable format. More...

#include <RRReporterHuman.hh>

Inheritance diagram for protocols::rotamer_recovery::RRReporterHuman:

Public Member Functions
	RRReporterHuman ()
	RRReporterHuman (RRReporterHuman const &src)
	~RRReporterHuman () override
void	set_comparer_info (std::string const &comparer_name, std::string const &comparer_params) override
void	set_protocol_info (std::string const &protocol_name, std::string const &protocol_params) override
void	reset_recovery () override
void	report_rotamer_recovery (core::pose::Pose const &pose1, core::pose::Pose const &pose2, core::conformation::Residue const &res1, core::conformation::Residue const &res2, core::Real score, bool recovered) override
core::Real	recovery_rate () const override
void	show (std::ostream &out) const override
void	show () const override
Public Member Functions inherited from protocols::rotamer_recovery::RRReporter
	~RRReporter () override
	Automatically generated virtual destructor for class deriving directly from ReferenceCount. More...

Private Member Functions
void	write_header (std::ostream &out) const

Private Attributes
std::string	protocol_name_
std::string	protocol_params_
std::string	comparer_name_
std::string	comparer_params_
core::Size	column_width_
core::Size	precision_
std::map< std::string, PerNativeRRReporterHuman >	per_native_recovery_
core::Real	residues_considered_
core::Size	rotamers_recovered_
core::Real	recovery_score_mean_
core::Real	recovery_score_m2_

Detailed Description

The reporting functionality for the rotamer recovery test in a human readable format.

Constructor & Destructor Documentation

protocols::rotamer_recovery::RRReporterHuman::RRReporterHuman

(

)

protocols::rotamer_recovery::RRReporterHuman::RRReporterHuman

(

RRReporterHuman const &

src

)

protocols::rotamer_recovery::RRReporterHuman::~RRReporterHuman ( )

overridedefault

Member Function Documentation

Real protocols::rotamer_recovery::RRReporterHuman::recovery_rate ( ) const

overridevirtual

Implements protocols::rotamer_recovery::RRReporter.

References residues_considered_, and rotamers_recovered_.

Referenced by show(), and write_header().

void protocols::rotamer_recovery::RRReporterHuman::report_rotamer_recovery ( core::pose::Pose const &  pose1, core::pose::Pose const &  pose2, core::conformation::Residue const &  res1, core::conformation::Residue const &  res2, core::Real  score, bool  recovered  )

overridevirtual

Implements protocols::rotamer_recovery::RRReporter.

References protocols::rotamer_recovery::PerNativeRRReporterHuman::initialized(), per_native_recovery_, recovery_score_m2_, recovery_score_mean_, protocols::rotamer_recovery::PerNativeRRReporterHuman::report_rotamer_recovery(), residues_considered_, rotamers_recovered_, protocols::rotamer_recovery::PerNativeRRReporterHuman::set_native(), and core::pose::tag_from_pose().

void protocols::rotamer_recovery::RRReporterHuman::reset_recovery ( )

overridevirtual

Implements protocols::rotamer_recovery::RRReporter.

References per_native_recovery_, recovery_score_m2_, recovery_score_mean_, residues_considered_, and rotamers_recovered_.

void protocols::rotamer_recovery::RRReporterHuman::set_comparer_info ( std::string const &  comparer_name, std::string const &  comparer_params  )

overridevirtual

Implements protocols::rotamer_recovery::RRReporter.

References comparer_name_, and comparer_params_.

void protocols::rotamer_recovery::RRReporterHuman::set_protocol_info ( std::string const &  protocol_name, std::string const &  protocol_params  )

overridevirtual

Implements protocols::rotamer_recovery::RRReporter.

References protocol_name_, and protocol_params_.

void protocols::rotamer_recovery::RRReporterHuman::show ( std::ostream &  out ) const

overridevirtual

Implements protocols::rotamer_recovery::RRReporter.

References per_native_recovery_, and write_header().

void protocols::rotamer_recovery::RRReporterHuman::show ( ) const

overridevirtual

Implements protocols::rotamer_recovery::RRReporter.

References recovery_rate(), residues_considered_, rotamers_recovered_, and protocols::rotamer_recovery::TR().

void protocols::rotamer_recovery::RRReporterHuman::write_header ( std::ostream &  out ) const

private

References protocols::comparative_modeling::features::A, column_width_, comparer_name_, comparer_params_, per_native_recovery_, protocol_name_, protocol_params_, recovery_rate(), recovery_score_m2_, recovery_score_mean_, residues_considered_, and rotamers_recovered_.

Referenced by show().

Member Data Documentation

core::Size protocols::rotamer_recovery::RRReporterHuman::column_width_

private

Referenced by write_header().

std::string protocols::rotamer_recovery::RRReporterHuman::comparer_name_

private

Referenced by set_comparer_info(), and write_header().

std::string protocols::rotamer_recovery::RRReporterHuman::comparer_params_

private

Referenced by set_comparer_info(), and write_header().

std::map< std::string, PerNativeRRReporterHuman > protocols::rotamer_recovery::RRReporterHuman::per_native_recovery_

private

Referenced by report_rotamer_recovery(), reset_recovery(), show(), and write_header().

core::Size protocols::rotamer_recovery::RRReporterHuman::precision_

private

std::string protocols::rotamer_recovery::RRReporterHuman::protocol_name_

private

Referenced by set_protocol_info(), and write_header().

std::string protocols::rotamer_recovery::RRReporterHuman::protocol_params_

private

Referenced by set_protocol_info(), and write_header().

core::Real protocols::rotamer_recovery::RRReporterHuman::recovery_score_m2_

private

Referenced by report_rotamer_recovery(), reset_recovery(), and write_header().

core::Real protocols::rotamer_recovery::RRReporterHuman::recovery_score_mean_

private

Referenced by report_rotamer_recovery(), reset_recovery(), and write_header().

core::Real protocols::rotamer_recovery::RRReporterHuman::residues_considered_

private

Referenced by recovery_rate(), report_rotamer_recovery(), reset_recovery(), show(), and write_header().

core::Size protocols::rotamer_recovery::RRReporterHuman::rotamers_recovered_

private

Referenced by recovery_rate(), report_rotamer_recovery(), reset_recovery(), show(), and write_header().

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The documentation for this class was generated from the following files:

• src/protocols/rotamer_recovery/RRReporterHuman.hh
• src/protocols/rotamer_recovery/RRReporterHuman.cc