protocols::task_operations::PreventChainFromRepackingOperation Class Reference

#include <PreventChainFromRepackingOperation.hh>

Inheritance diagram for protocols::task_operations::PreventChainFromRepackingOperation:

Public Types
typedef RestrictOperationsBase	parent
Public Types inherited from protocols::task_operations::RestrictOperationsBase
typedef core::pack::task::operation::TaskOperation	TaskOperation
typedef core::pack::task::operation::TaskOperationOP	TaskOperationOP
typedef TaskOperation	parent
Public Types inherited from core::pack::task::operation::TaskOperation
typedef utility::tag::TagCOP	TagCOP
typedef basic::datacache::DataMap	DataMap
typedef pose::Pose	Pose

Public Member Functions
	PreventChainFromRepackingOperation ()
	PreventChainFromRepackingOperation (core::Size const chain)
void	chain (core::Size const chain)
core::Size	chain () const
	~PreventChainFromRepackingOperation () override
TaskOperationOP	clone () const override
	Create another task operation of the type matching the most-derived version of the class. More...
void	apply (core::pose::Pose const &, core::pack::task::PackerTask &) const override
	Change a packer task in some way. The input pose is the one to which the input task will be later applied. More...
void	parse_tag (TagCOP, DataMap &) override
	Used to parse an xml-like tag to load parameters and properties. More...
Public Member Functions inherited from protocols::task_operations::RestrictOperationsBase
	RestrictOperationsBase ()
	~RestrictOperationsBase () override
Public Member Functions inherited from core::pack::task::operation::TaskOperation
	~TaskOperation () override
virtual bool	task_operation_provides_citation_info () const
	Does this task operation provide information about how to cite it? More...
virtual utility::vector1 < basic::citation_manager::CitationCollectionCOP >	provide_citation_info () const
	Provide the citation. More...
virtual bool	task_operation_is_unpublished () const
	Does this task_operation indicate that it is unpublished (and, by extension, that the author should be included in publications resulting from it)? More...
virtual utility::vector1 < basic::citation_manager::UnpublishedModuleInfoCOP >	provide_authorship_info_for_unpublished () const
	Provide a list of authors and their e-mail addresses, as strings. More...

Static Public Member Functions
static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)
static std::string	keyname ()

Private Attributes
core::Size	chain_

Additional Inherited Members
Protected Member Functions inherited from protocols::task_operations::RestrictOperationsBase
void	run_calculator (core::pose::Pose const &pose, std::string const &calculator, std::string const &calculation, utility::vector1_bool &residues) const
	this is the only real function - it takes a calculator name and calculation, and a PackerTask-compatible vector, and flips booleans in the vector according to the calculator More...

Detailed Description

this class is a TaskOperation to prevent repacking of residues not near an interface.

Member Typedef Documentation

typedef RestrictOperationsBase protocols::task_operations::PreventChainFromRepackingOperation::parent

Constructor & Destructor Documentation

protocols::task_operations::PreventChainFromRepackingOperation::PreventChainFromRepackingOperation ( )

default

protocols::task_operations::PreventChainFromRepackingOperation::PreventChainFromRepackingOperation

(

core::Size const

chain

)

protocols::task_operations::PreventChainFromRepackingOperation::~PreventChainFromRepackingOperation ( )

overridedefault

Member Function Documentation

void protocols::task_operations::PreventChainFromRepackingOperation::apply ( core::pose::Pose const &  , core::pack::task::PackerTask &    ) const

overridevirtual

Change a packer task in some way. The input pose is the one to which the input task will be later applied.

Implements protocols::task_operations::RestrictOperationsBase.

References chain(), chain_, core::conformation::Conformation::chain_begin(), core::conformation::Conformation::chain_end(), core::pose::Pose::conformation(), core::pack::task::operation::PreventRepacking::include_residue(), and core::conformation::Conformation::num_chains().

Referenced by protocols::task_operations::ProteinInterfaceDesignOperation::apply().

void protocols::task_operations::PreventChainFromRepackingOperation::chain

(

core::Size const

chain

)

References chain(), and chain_.

Referenced by protocols::task_operations::ProteinInterfaceDesignOperation::apply().

core::Size protocols::task_operations::PreventChainFromRepackingOperation::chain

(

)

const

References chain_.

Referenced by apply(), chain(), and parse_tag().

core::pack::task::operation::TaskOperationOP protocols::task_operations::PreventChainFromRepackingOperation::clone ( ) const

overridevirtual

Create another task operation of the type matching the most-derived version of the class.

Implements protocols::task_operations::RestrictOperationsBase.

static std::string protocols::task_operations::PreventChainFromRepackingOperation::keyname ( )

inlinestatic

Referenced by protocols::task_operations::PreventChainFromRepackingOperationCreator::keyname(), and provide_xml_schema().

void protocols::task_operations::PreventChainFromRepackingOperation::parse_tag ( TagCOP  tag, DataMap &    )

overridevirtual

Used to parse an xml-like tag to load parameters and properties.

Reimplemented from core::pack::task::operation::TaskOperation.

References chain().

void protocols::task_operations::PreventChainFromRepackingOperation::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd )

static

References keyname(), and core::pack::task::operation::task_op_schema_w_attributes().

Referenced by protocols::task_operations::PreventChainFromRepackingOperationCreator::provide_xml_schema().

Member Data Documentation

core::Size protocols::task_operations::PreventChainFromRepackingOperation::chain_

private

Referenced by apply(), and chain().

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The documentation for this class was generated from the following files:

• src/protocols/task_operations/PreventChainFromRepackingOperation.hh
• src/protocols/task_operations/PreventChainFromRepackingOperation.cc