![]() |
Rosetta
2020.11
|
Namespaces | |
evaluator | |
Classes | |
struct | cycle_printer |
class | Loop |
class | LoopCloseEnergy |
class | LoopCloseEnergyCreator |
class | LoopCycle |
class | LoopGraph |
Typedefs | |
typedef utility::pointer::shared_ptr < Loop > | LoopOP |
typedef utility::pointer::shared_ptr < Loop const > | LoopCOP |
typedef utility::pointer::shared_ptr < LoopCycle > | LoopCycleOP |
typedef utility::pointer::shared_ptr < LoopCycle const > | LoopCycleCOP |
typedef utility::pointer::shared_ptr < LoopGraph > | LoopGraphOP |
typedef utility::pointer::shared_ptr < LoopGraph const > | LoopGraphCOP |
typedef utility::pointer::shared_ptr < util > | utilOP |
typedef utility::pointer::shared_ptr < util const > | utilCOP |
Functions | |
std::ostream & | operator<< (std::ostream &os, LoopCycle const &loop_cycle) |
Test IO operator for debug and Python bindings. More... | |
void | get_loop_atom (Size const res, core::pose::Pose const &pose, id::AtomID &atom_id, Vector &xyz, bool const takeoff) |
void | get_loop_atom (core::Size const res, core::pose::Pose const &pose, std::string const &atom_name, id::AtomID &atom_id, Vector &xyz) |
LoopClosePotentialEvaluatorCOP | get_loop_close_potential (pose::Pose const &pose, LoopCycle const &loop_cycle, core::Real const &loop_fixed_cost, bool const use_6D_potential) |
LoopClosePotentialEvaluatorCOP | get_6D_trans_rot_potential_evaluator (LoopCycle const &loop_cycle, core::Real const &loop_fixed_cost, pose::Pose const &pose) |
typedef utility::pointer::shared_ptr< Loop const > core::scoring::loop_graph::LoopCOP |
typedef utility::pointer::shared_ptr< LoopCycle const > core::scoring::loop_graph::LoopCycleCOP |
typedef utility::pointer::shared_ptr< LoopCycle > core::scoring::loop_graph::LoopCycleOP |
typedef utility::pointer::shared_ptr< LoopGraph const > core::scoring::loop_graph::LoopGraphCOP |
typedef utility::pointer::shared_ptr< LoopGraph > core::scoring::loop_graph::LoopGraphOP |
typedef utility::pointer::shared_ptr< Loop > core::scoring::loop_graph::LoopOP |
typedef utility::pointer::shared_ptr< util const > core::scoring::loop_graph::utilCOP |
typedef utility::pointer::shared_ptr< util > core::scoring::loop_graph::utilOP |
evaluator::LoopClosePotentialEvaluatorCOP core::scoring::loop_graph::get_6D_trans_rot_potential_evaluator | ( | LoopCycle const & | loop_cycle, |
core::Real const & | loop_fixed_cost, | ||
pose::Pose const & | pose | ||
) |
References core::pose::full_model_info::get_residue(), core::conformation::Residue::is_NA(), core::scoring::loop_graph::Loop::landing_pos(), core::scoring::loop_graph::LoopCycle::loop(), core::conformation::Residue::name(), core::conformation::Residue::seqpos(), core::scoring::loop_graph::Loop::takeoff_pos(), and core::scoring::TR().
Referenced by get_loop_close_potential().
void core::scoring::loop_graph::get_loop_atom | ( | Size const | res, |
core::pose::Pose const & | pose, | ||
id::AtomID & | atom_id, | ||
Vector & | xyz, | ||
bool const | takeoff | ||
) |
void core::scoring::loop_graph::get_loop_atom | ( | core::Size const | res, |
core::pose::Pose const & | pose, | ||
std::string const & | atom_name, | ||
id::AtomID & | atom_id, | ||
Vector & | xyz | ||
) |
References core::pose::full_model_info::get_residue().
evaluator::LoopClosePotentialEvaluatorCOP core::scoring::loop_graph::get_loop_close_potential | ( | pose::Pose const & | pose, |
LoopCycle const & | loop_cycle, | ||
core::Real const & | loop_fixed_cost, | ||
bool const | use_6D_potential | ||
) |
References get_6D_trans_rot_potential_evaluator(), and core::scoring::loop_graph::LoopCycle::size().
Referenced by core::scoring::loop_graph::LoopGraph::update().
std::ostream& core::scoring::loop_graph::operator<< | ( | std::ostream & | os, |
LoopCycle const & | loop_cycle | ||
) |
Test IO operator for debug and Python bindings.
References core::scoring::loop_graph::LoopCycle::loops_.