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Rosetta
2020.11
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Classes | |
class | CaCbCb_Angle_Func |
class | CaCbCbCa_Dihedral_Func |
class | CB_Angle_Func |
class | Cb_Distance_Func |
Score based on the distance between Cb. More... | |
class | CBSG_Dihedral_Func |
class | Cen_Distance_Func |
class | CentroidDisulfideEnergy |
class | CentroidDisulfideEnergyComponents |
Storage for Disulfide Energy Terms. More... | |
class | CentroidDisulfideEnergyContainer |
class | CentroidDisulfideEnergyCreator |
class | CentroidDisulfideNeighborConstIterator |
Just a const version of CentroidDisulfideNeighborIterator. More... | |
class | CentroidDisulfideNeighborIterator |
An iterator over the disulfide bonds a residue forms. More... | |
class | CentroidDisulfidePotential |
class | DisulfideAtomIndices |
This class is used by the *DisulfideEnergyContainer and the *DisulfidePotential classes to rapidly index into a residue that's known to form a disulfide. For the sake of computing derivatives, there are only three atoms that need to be readily available: CA, CB, and the atom which makes the disulfide bond, either SG or CEN. The DisulfideEnergyContainer is responsible for keeping the indices in one of these objects up-to-date with the residue it is meant to shadow. More... | |
class | DisulfideMatchingDatabase |
class | DisulfideMatchingEnergy |
class | DisulfideMatchingEnergyComponents |
Storage for Disulfide Energy Terms. More... | |
class | DisulfideMatchingEnergyContainer |
class | DisulfideMatchingEnergyCreator |
class | DisulfideMatchingNeighborConstIterator |
Just a const version of DisulfideMatchingNeighborIterator. More... | |
class | DisulfideMatchingNeighborIterator |
An iterator over the disulfide bonds a residue forms. More... | |
class | DisulfideMatchingPotential |
class | DisulfMinData |
class | DisulfResNeighbConstIterator |
class | DisulfResNeighbIterator |
class | FullatomDisulfideEnergy |
class | FullatomDisulfideEnergyComponents |
class | FullatomDisulfideEnergyContainer |
class | FullatomDisulfideEnergyCreator |
struct | FullatomDisulfideParams13 |
class | FullatomDisulfidePotential |
class | NCaCaC_Dihedral_Func |
class | RT_helper |
class | SG_Dist_Func |
class | SGSG_Dihedral_Func |
Enumerations | |
enum | DisulfideDerivativeAtom { NO_DERIVATIVES_FOR_ATOM = 0, CYS_C_ALPHA, CYS_C_BETA, CYS_S_GAMMA, CYS_CEN } |
Functions | |
static basic::Tracer | TR ("core.scoring.disulfides.CentroidDisulfideEnergy") |
static basic::Tracer | TR ("core.scoring.disulfides.DisulfideMatchingEnergy") |
static basic::Tracer | TR ("core.scoring.disulfides.CentroidDisulfideEnergyContainer") |
static HistogramCOP< Real, Real >::Type | histogram_from_db (string file) |
Helper function for initializing Histograms from the database. More... | |
static basic::Tracer | TR ("core.scoring.disulfides.DisulfideMatchingEnergyContainer") |
typedef utility::pointer::weak_ptr< CaCbCb_Angle_Func > core::scoring::disulfides::CaCbCb_Angle_FuncAP |
typedef utility::pointer::weak_ptr< CaCbCb_Angle_Func const > core::scoring::disulfides::CaCbCb_Angle_FuncCAP |
typedef utility::pointer::shared_ptr< CaCbCb_Angle_Func const > core::scoring::disulfides::CaCbCb_Angle_FuncCOP |
typedef utility::pointer::shared_ptr< CaCbCb_Angle_Func > core::scoring::disulfides::CaCbCb_Angle_FuncOP |
typedef utility::pointer::weak_ptr< CaCbCbCa_Dihedral_Func > core::scoring::disulfides::CaCbCbCa_Dihedral_FuncAP |
typedef utility::pointer::weak_ptr< CaCbCbCa_Dihedral_Func const > core::scoring::disulfides::CaCbCbCa_Dihedral_FuncCAP |
typedef utility::pointer::shared_ptr< CaCbCbCa_Dihedral_Func const > core::scoring::disulfides::CaCbCbCa_Dihedral_FuncCOP |
typedef utility::pointer::shared_ptr< CaCbCbCa_Dihedral_Func > core::scoring::disulfides::CaCbCbCa_Dihedral_FuncOP |
typedef utility::pointer::shared_ptr< CB_Angle_Func > core::scoring::disulfides::CB_Angle_FuncOP |
typedef utility::pointer::weak_ptr< Cb_Distance_Func > core::scoring::disulfides::Cb_Distance_FuncAP |
typedef utility::pointer::weak_ptr< Cb_Distance_Func const > core::scoring::disulfides::Cb_Distance_FuncCAP |
typedef utility::pointer::shared_ptr< Cb_Distance_Func const > core::scoring::disulfides::Cb_Distance_FuncCOP |
typedef utility::pointer::shared_ptr< Cb_Distance_Func > core::scoring::disulfides::Cb_Distance_FuncOP |
typedef utility::pointer::shared_ptr< CBSG_Dihedral_Func > core::scoring::disulfides::CBSG_Dihedral_FuncOP |
typedef utility::pointer::weak_ptr< Cen_Distance_Func > core::scoring::disulfides::Cen_Distance_FuncAP |
typedef utility::pointer::weak_ptr< Cen_Distance_Func const > core::scoring::disulfides::Cen_Distance_FuncCAP |
typedef utility::pointer::shared_ptr< Cen_Distance_Func const > core::scoring::disulfides::Cen_Distance_FuncCOP |
typedef utility::pointer::shared_ptr< Cen_Distance_Func > core::scoring::disulfides::Cen_Distance_FuncOP |
typedef utility::pointer::weak_ptr< CentroidDisulfideEnergyContainer > core::scoring::disulfides::CentroidDisulfideEnergyContainerAP |
typedef utility::pointer::weak_ptr< CentroidDisulfideEnergyContainer const > core::scoring::disulfides::CentroidDisulfideEnergyContainerCAP |
typedef utility::pointer::shared_ptr< CentroidDisulfideEnergyContainer const > core::scoring::disulfides::CentroidDisulfideEnergyContainerCOP |
typedef utility::pointer::shared_ptr< CentroidDisulfideEnergyContainer > core::scoring::disulfides::CentroidDisulfideEnergyContainerOP |
typedef utility::pointer::shared_ptr< CentroidDisulfideEnergy const > core::scoring::disulfides::CentroidDisulfideEnergyCOP |
typedef utility::pointer::shared_ptr< CentroidDisulfideEnergy > core::scoring::disulfides::CentroidDisulfideEnergyOP |
typedef utility::pointer::weak_ptr< CentroidDisulfidePotential > core::scoring::disulfides::CentroidDisulfidePotentialAP |
typedef utility::pointer::weak_ptr< CentroidDisulfidePotential const > core::scoring::disulfides::CentroidDisulfidePotentialCAP |
typedef utility::pointer::shared_ptr< CentroidDisulfidePotential const > core::scoring::disulfides::CentroidDisulfidePotentialCOP |
typedef utility::pointer::shared_ptr< CentroidDisulfidePotential > core::scoring::disulfides::CentroidDisulfidePotentialOP |
typedef utility::pointer::weak_ptr< DisulfideMatchingEnergyContainer > core::scoring::disulfides::DisulfideMatchingEnergyContainerAP |
typedef utility::pointer::weak_ptr< DisulfideMatchingEnergyContainer const > core::scoring::disulfides::DisulfideMatchingEnergyContainerCAP |
typedef utility::pointer::shared_ptr< DisulfideMatchingEnergyContainer const > core::scoring::disulfides::DisulfideMatchingEnergyContainerCOP |
typedef utility::pointer::shared_ptr< DisulfideMatchingEnergyContainer > core::scoring::disulfides::DisulfideMatchingEnergyContainerOP |
typedef utility::pointer::shared_ptr< DisulfideMatchingEnergy const > core::scoring::disulfides::DisulfideMatchingEnergyCOP |
typedef utility::pointer::shared_ptr< DisulfideMatchingEnergy > core::scoring::disulfides::DisulfideMatchingEnergyOP |
typedef utility::pointer::weak_ptr< DisulfideMatchingPotential > core::scoring::disulfides::DisulfideMatchingPotentialAP |
typedef utility::pointer::weak_ptr< DisulfideMatchingPotential const > core::scoring::disulfides::DisulfideMatchingPotentialCAP |
typedef utility::pointer::shared_ptr< DisulfideMatchingPotential const > core::scoring::disulfides::DisulfideMatchingPotentialCOP |
typedef utility::pointer::shared_ptr< DisulfideMatchingPotential > core::scoring::disulfides::DisulfideMatchingPotentialOP |
using core::scoring::disulfides::DisulfMinDataCOP = typedef utility::pointer::shared_ptr<const DisulfMinData> |
using core::scoring::disulfides::DisulfMinDataOP = typedef utility::pointer::shared_ptr<DisulfMinData> |
typedef utility::pointer::weak_ptr< FullatomDisulfideEnergyContainer > core::scoring::disulfides::FullatomDisulfideEnergyContainerAP |
typedef utility::pointer::weak_ptr< FullatomDisulfideEnergyContainer const > core::scoring::disulfides::FullatomDisulfideEnergyContainerCAP |
typedef utility::pointer::shared_ptr< FullatomDisulfideEnergyContainer const > core::scoring::disulfides::FullatomDisulfideEnergyContainerCOP |
typedef utility::pointer::shared_ptr< FullatomDisulfideEnergyContainer > core::scoring::disulfides::FullatomDisulfideEnergyContainerOP |
typedef utility::pointer::shared_ptr< FullatomDisulfideEnergy const > core::scoring::disulfides::FullatomDisulfideEnergyCOP |
typedef utility::pointer::shared_ptr< FullatomDisulfideEnergy > core::scoring::disulfides::FullatomDisulfideEnergyOP |
typedef utility::pointer::weak_ptr< FullatomDisulfidePotential > core::scoring::disulfides::FullatomDisulfidePotentialAP |
typedef utility::pointer::weak_ptr< FullatomDisulfidePotential const > core::scoring::disulfides::FullatomDisulfidePotentialCAP |
typedef utility::pointer::shared_ptr< FullatomDisulfidePotential const > core::scoring::disulfides::FullatomDisulfidePotentialCOP |
typedef utility::pointer::shared_ptr< FullatomDisulfidePotential > core::scoring::disulfides::FullatomDisulfidePotentialOP |
typedef utility::pointer::weak_ptr< NCaCaC_Dihedral_Func > core::scoring::disulfides::NCaCaC_Dihedral_FuncAP |
typedef utility::pointer::weak_ptr< NCaCaC_Dihedral_Func const > core::scoring::disulfides::NCaCaC_Dihedral_FuncCAP |
typedef utility::pointer::shared_ptr< NCaCaC_Dihedral_Func const > core::scoring::disulfides::NCaCaC_Dihedral_FuncCOP |
typedef utility::pointer::shared_ptr< NCaCaC_Dihedral_Func > core::scoring::disulfides::NCaCaC_Dihedral_FuncOP |
typedef utility::pointer::shared_ptr< SG_Dist_Func > core::scoring::disulfides::SG_Dist_FuncOP |
typedef utility::pointer::shared_ptr< SGSG_Dihedral_Func > core::scoring::disulfides::SGSG_Dihedral_FuncOP |
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Helper function for initializing Histograms from the database.
Referenced by core::scoring::disulfides::Cen_Distance_Func::func(), core::scoring::disulfides::CaCbCb_Angle_Func::func(), core::scoring::disulfides::NCaCaC_Dihedral_Func::func(), and core::scoring::disulfides::CaCbCbCa_Dihedral_Func::func().
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