core::select::residue_selector::ResiduePDBInfoHasLabelSelector Class Reference

The ResiduePDBInfoHasLabelSelector returns a ResidueSubset, i.e. a utility::vector1< bool > containing 'true' for residue positions with the given label in pose PDB info for that residue. More...

#include <ResiduePDBInfoHasLabelSelector.hh>

Inheritance diagram for core::select::residue_selector::ResiduePDBInfoHasLabelSelector:

Public Member Functions
	ResiduePDBInfoHasLabelSelector ()
	ResiduePDBInfoHasLabelSelector (std::string const &label_str)
	~ResiduePDBInfoHasLabelSelector () override
	ResiduePDBInfoHasLabelSelector (ResiduePDBInfoHasLabelSelector const &src)
	Copy constructor. More...
ResidueSelectorOP	clone () const override
	Clone operator. More...
ResidueSubset	apply (core::pose::Pose const &pose) const override
	Return a ResidueSubset indicating a selection of Residues from the input Pose; the ResidueSubset is an array of booleans where a value of "true" for position i indicates that residue i is a part of the selected subset – and a value of "false" would indicate that it is not. More...
void	parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &) override
	Initialize any data members of this instance from an input tag and a DataMap object. More...
std::string	get_name () const override
void	set_label (std::string const &label_str)
Public Member Functions inherited from core::select::residue_selector::ResidueSelector
	ResidueSelector ()
	Constructor. More...
	~ResidueSelector () override
	Destructor. More...
virtual bool	residue_selector_provides_citation_info () const
	Does this residue selector provide information about how to cite it? More...
virtual utility::vector1 < basic::citation_manager::CitationCollectionCOP >	provide_citation_info () const
	Provide the citation. More...
virtual bool	residue_selector_is_unpublished () const
	Does this residue selector indicate that it is unpublished (and, by extension, that the author should be included in publications resulting from it)? More...
virtual utility::vector1 < basic::citation_manager::UnpublishedModuleInfoCOP >	provide_authorship_info_for_unpublished () const
	Provide a list of authors and their e-mail addresses, as strings. More...

Static Public Member Functions
static std::string	class_name ()
static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)

Private Attributes
std::string	label_

Detailed Description

The ResiduePDBInfoHasLabelSelector returns a ResidueSubset, i.e. a utility::vector1< bool > containing 'true' for residue positions with the given label in pose PDB info for that residue.

Constructor & Destructor Documentation

core::select::residue_selector::ResiduePDBInfoHasLabelSelector::ResiduePDBInfoHasLabelSelector

(

)

core::select::residue_selector::ResiduePDBInfoHasLabelSelector::ResiduePDBInfoHasLabelSelector

(

std::string const &

label_str

)

core::select::residue_selector::ResiduePDBInfoHasLabelSelector::~ResiduePDBInfoHasLabelSelector ( )

overridedefault

core::select::residue_selector::ResiduePDBInfoHasLabelSelector::ResiduePDBInfoHasLabelSelector

(

ResiduePDBInfoHasLabelSelector const &

src

)

Copy constructor.

Member Function Documentation

ResidueSubset core::select::residue_selector::ResiduePDBInfoHasLabelSelector::apply ( core::pose::Pose const &  pose ) const

overridevirtual

Return a ResidueSubset indicating a selection of Residues from the input Pose; the ResidueSubset is an array of booleans where a value of "true" for position i indicates that residue i is a part of the selected subset – and a value of "false" would indicate that it is not.

Implements core::select::residue_selector::ResidueSelector.

References label_, core::pose::Pose::pdb_info(), core::pose::Pose::size(), and core::select::residue_selector::TR().

Referenced by protocols::fold_from_loops::utils::Nub::assign_disulfides(), and protocols::hbnet::HBNetScore::get_score().

std::string core::select::residue_selector::ResiduePDBInfoHasLabelSelector::class_name ( )

static

Referenced by get_name(), core::select::residue_selector::ResiduePDBInfoHasLabelSelectorCreator::keyname(), and provide_xml_schema().

ResidueSelectorOP core::select::residue_selector::ResiduePDBInfoHasLabelSelector::clone ( ) const

overridevirtual

Clone operator.

Copy this object and return an owning pointer to the new object.

Implements core::select::residue_selector::ResidueSelector.

std::string core::select::residue_selector::ResiduePDBInfoHasLabelSelector::get_name ( ) const

overridevirtual

Implements core::select::residue_selector::ResidueSelector.

References class_name().

void core::select::residue_selector::ResiduePDBInfoHasLabelSelector::parse_my_tag ( utility::tag::TagCOP  tag, basic::datacache::DataMap &  datacache  )

overridevirtual

Initialize any data members of this instance from an input tag and a DataMap object.

Noop implementation in the base class in the case that a derived class has no need to read data from an input tag

Reimplemented from core::select::residue_selector::ResidueSelector.

References label_, and set_label().

void core::select::residue_selector::ResiduePDBInfoHasLabelSelector::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd )

static

References class_name(), and core::select::residue_selector::xsd_type_definition_w_attributes().

Referenced by core::select::residue_selector::ResiduePDBInfoHasLabelSelectorCreator::provide_xml_schema().

void core::select::residue_selector::ResiduePDBInfoHasLabelSelector::set_label

(

std::string const &

label_str

)

References label_.

Referenced by protocols::fold_from_loops::utils::Nub::assign_disulfides(), protocols::fold_from_loops::movers::DisplayPoseLabelsMover::find_labels(), protocols::fold_from_loops::movers::DisplayPoseLabelsMover::find_labels2(), and parse_my_tag().

Member Data Documentation

std::string core::select::residue_selector::ResiduePDBInfoHasLabelSelector::label_

private

Referenced by apply(), parse_my_tag(), and set_label().

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The documentation for this class was generated from the following files:

• src/core/select/residue_selector/ResiduePDBInfoHasLabelSelector.hh
• src/core/select/residue_selector/ResiduePDBInfoHasLabelSelector.cc