#include <RestrictToLoops.hh>

Inheritance diagram for protocols::simple_task_operations::RestrictToLoops:

Public Types
typedef core::pack::task::operation::TaskOperation	parent

Public Types inherited from core::pack::task::operation::TaskOperation
typedef utility::tag::TagCOP	TagCOP

typedef basic::datacache::DataMap	DataMap

typedef pose::Pose	Pose

Public Member Functions
	RestrictToLoops ()=default
	Default constructor. More...

core::pack::task::operation::TaskOperationOP	clone () const override
	Return a deep-copied OP. More...

void	parse_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &) override
	Configure from a RosettaScripts XML tag. More...

void	apply (core::pose::Pose const &pose, core::pack::task::PackerTask &task) const override
	Apply this operation to the packer task. More...

bool	design_loop () const
	Return true if design is allowed. More...

void	set_design_loop (bool design_loop)
	Specify whether or not design is allowed. More...

loops::LoopsCOP	loops () const
	Return the loops allowed to pack. More...

void	set_loops (loops::LoopsCOP loops)
	Specify the loops that will be allowed to pack. More...

void	set_loops_from_file (std::string loops_file)
	Specify the loops that will be allowed to pack. More...

bool	restrict_only_design_to_loops () const
	Return true if we are restricting to only design. AKA RestrictDesignToLoops. More...

void	set_restrict_only_design_to_loops (bool restrict_only_design)
	Specify whether to restrict only design to loops/neighbors AKA RestrictDesignToLoops. Does not disable packing for any residue. Implies and sets design_loop to true. More...

Public Member Functions inherited from core::pack::task::operation::TaskOperation
	~TaskOperation () override

virtual bool	task_operation_provides_citation_info () const
	Does this task operation provide information about how to cite it? More...

virtual utility::vector1 < basic::citation_manager::CitationCollectionCOP >	provide_citation_info () const
	Provide the citation. More...

virtual bool	task_operation_is_unpublished () const
	Does this task_operation indicate that it is unpublished (and, by extension, that the author should be included in publications resulting from it)? More...

virtual utility::vector1 < basic::citation_manager::UnpublishedModuleInfoCOP >	provide_authorship_info_for_unpublished () const
	Provide a list of authors and their e-mail addresses, as strings. More...

Static Public Member Functions
static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)

static void	provide_attributes (utility::tag::AttributeList &attributes)

static std::string	keyname ()

Protected Member Functions
void	apply_helper (core::pose::Pose const &pose, core::pack::task::PackerTask &task, bool include_neighbors, core::Real cutoff_distance, bool design_neighbors) const
	Helper function to prevent code duplication in subclasses. More...

Private Attributes
bool	design_loops_ = false

bool	restrict_only_design_ = false

utility::pointer::DeepCopyOP < loops::Loops const >	loops_

Member Typedef Documentation

typedef core::pack::task::operation::TaskOperation protocols::simple_task_operations::RestrictToLoops::parent

Constructor & Destructor Documentation

protocols::simple_task_operations::RestrictToLoops::RestrictToLoops ( )

default

Default constructor.

Member Function Documentation

void protocols::simple_task_operations::RestrictToLoops::apply	(	core::pose::Pose const &	pose,
		core::pack::task::PackerTask &	task
	)		const

overridevirtual

Apply this operation to the packer task.

Implements core::pack::task::operation::TaskOperation.

Reimplemented in protocols::simple_task_operations::RestrictToLoopsAndNeighbors.

void protocols::simple_task_operations::RestrictToLoops::apply_helper	(	core::pose::Pose const &	pose,
		core::pack::task::PackerTask &	task,
		bool	include_neighbors,
		core::Real	cutoff_distance,
		bool	design_neighbors
	)		const

protected

Helper function to prevent code duplication in subclasses.

References core::pack::task::operation::RestrictResidueToRepacking::apply(), core::pack::task::operation::PreventRepacking::apply(), core::pack::task::operation::RestrictResidueToRepacking::include_residue(), core::pack::task::operation::PreventRepacking::include_residue(), core::pose::symmetry::make_residue_mask_symmetric(), protocols::loops::select_loop_residues(), and core::pose::Pose::size().

TaskOperationOP protocols::simple_task_operations::RestrictToLoops::clone ( ) const

overridevirtual

Return a deep-copied OP.

Implements core::pack::task::operation::TaskOperation.

Reimplemented in protocols::simple_task_operations::RestrictToLoopsAndNeighbors.

bool protocols::simple_task_operations::RestrictToLoops::design_loop ( ) const

Return true if design is allowed.

static std::string protocols::simple_task_operations::RestrictToLoops::keyname ( )

inlinestatic

Referenced by protocols::simple_task_operations::RestrictToLoopsCreator::keyname().

LoopsCOP protocols::simple_task_operations::RestrictToLoops::loops ( ) const

Return the loops allowed to pack.

void protocols::simple_task_operations::RestrictToLoops::parse_tag	(	utility::tag::TagCOP	tag,
		basic::datacache::DataMap &
	)

overridevirtual

Configure from a RosettaScripts XML tag.

Reimplemented from core::pack::task::operation::TaskOperation.

Reimplemented in protocols::simple_task_operations::RestrictToLoopsAndNeighbors.

void protocols::simple_task_operations::RestrictToLoops::provide_attributes ( utility::tag::AttributeList & attributes )

static

Referenced by protocols::simple_task_operations::RestrictToLoopsAndNeighbors::provide_xml_schema().

void protocols::simple_task_operations::RestrictToLoops::provide_xml_schema ( utility::tag::XMLSchemaDefinition & xsd )

static

References core::pack::task::operation::task_op_schema_w_attributes().

Referenced by protocols::simple_task_operations::RestrictToLoopsCreator::provide_xml_schema().

bool protocols::simple_task_operations::RestrictToLoops::restrict_only_design_to_loops ( ) const

Return true if we are restricting to only design. AKA RestrictDesignToLoops.

void protocols::simple_task_operations::RestrictToLoops::set_design_loop ( bool design_loop )

Specify whether or not design is allowed.

void protocols::simple_task_operations::RestrictToLoops::set_loops ( loops::LoopsCOP loops )

Specify the loops that will be allowed to pack.

void protocols::simple_task_operations::RestrictToLoops::set_loops_from_file ( std::string loops_file )

Specify the loops that will be allowed to pack.

void protocols::simple_task_operations::RestrictToLoops::set_restrict_only_design_to_loops ( bool restrict_only_design )

Specify whether to restrict only design to loops/neighbors AKA RestrictDesignToLoops. Does not disable packing for any residue. Implies and sets design_loop to true.

Member Data Documentation

bool protocols::simple_task_operations::RestrictToLoops::design_loops_ = false

private

utility::pointer::DeepCopyOP< loops::Loops const > protocols::simple_task_operations::RestrictToLoops::loops_

private

bool protocols::simple_task_operations::RestrictToLoops::restrict_only_design_ = false

private

The documentation for this class was generated from the following files:

src/protocols/simple_task_operations/RestrictToLoops.hh
src/protocols/simple_task_operations/RestrictToLoops.cc

Public Types

Public Member Functions

Static Public Member Functions

Protected Member Functions

Private Attributes

Member Typedef Documentation

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation