core::scoring::netcharge_energy Namespace Reference

Classes
class	NetChargeConstraint
class	NetChargeEnergy
	NetChargeEnergy, an energy function to penalize stretches of the same residue, derived from base class for EnergyMethods, which are meaningful only on entire structures. These EnergyMethods do all of their work in the "finalize_total_energy" section of score function evaluation. More...
class	NetChargeEnergyCreator
class	NetChargeEnergySetup
	NetChargeEnergySetup, a helper class for the NetChargeEnergy energy method that stores all of its setup data. More...

Typedefs
typedef utility::pointer::shared_ptr < NetChargeEnergy >	NetChargeEnergyOP
typedef utility::pointer::shared_ptr < NetChargeConstraint >	NetChargeConstraintOP
typedef utility::pointer::shared_ptr < NetChargeConstraint const >	NetChargeConstraintCOP
typedef utility::pointer::shared_ptr < NetChargeEnergySetup >	NetChargeEnergySetupOP
typedef utility::pointer::shared_ptr < NetChargeEnergySetup const >	NetChargeEnergySetupCOP

Enumerations
enum	TailFunction {   tf_linear = 1, tf_quadratic, tf_constant, tf_unknown,   tf_end_of_list =tf_unknown }
	The different types of behaviour for the penalty values past the defined range. More...

Functions
static basic::Tracer	TR ("core.scoring.netcharge_energy.NetChargeEnergy")
static basic::Tracer	TR ("core.scoring.netcharge_energy.NetChargeConstraint")
static basic::Tracer	TR ("core.scoring.netcharge_energy.NetChargeEnergySetup")

Typedef Documentation

typedef utility::pointer::shared_ptr< NetChargeConstraint const > core::scoring::netcharge_energy::NetChargeConstraintCOP

typedef utility::pointer::shared_ptr< NetChargeConstraint > core::scoring::netcharge_energy::NetChargeConstraintOP

typedef utility::pointer::shared_ptr< NetChargeEnergy > core::scoring::netcharge_energy::NetChargeEnergyOP

typedef utility::pointer::shared_ptr< NetChargeEnergySetup const > core::scoring::netcharge_energy::NetChargeEnergySetupCOP

typedef utility::pointer::shared_ptr< NetChargeEnergySetup > core::scoring::netcharge_energy::NetChargeEnergySetupOP

Enumeration Type Documentation

enum core::scoring::netcharge_energy::TailFunction

The different types of behaviour for the penalty values past the defined range.

When values are added to this enum, they should also be added to the NetChargeEnergySetup::get_tailfunction_name() function.

Enumerator
tf_linear
tf_quadratic
tf_constant
tf_unknown
tf_end_of_list

Function Documentation

static basic::Tracer core::scoring::netcharge_energy::TR ( "core.scoring.netcharge_energy.NetChargeConstraint"  )

static

static basic::Tracer core::scoring::netcharge_energy::TR ( "core.scoring.netcharge_energy.NetChargeEnergy"  )

static

Referenced by core::scoring::netcharge_energy::NetChargeEnergySetup::check_data(), core::scoring::netcharge_energy::NetChargeEnergySetup::initialize_from_file(), and core::scoring::netcharge_energy::NetChargeEnergySetup::initialize_from_file_contents().

static basic::Tracer core::scoring::netcharge_energy::TR ( "core.scoring.netcharge_energy.NetChargeEnergySetup"  )

static