#include <NMerPSSMEnergyFilter.hh>

Inheritance diagram for protocols::simple_filters::NMerPSSMEnergyFilter:

Public Member Functions
	NMerPSSMEnergyFilter ()

	NMerPSSMEnergyFilter (core::Real const score_type_threshold, std::string string_resnums)

bool	apply (core::pose::Pose const &pose) const override
	Returns true if the given pose passes the filter, false otherwise. More...

filters::FilterOP	clone () const override

filters::FilterOP	fresh_instance () const override

void	report (std::ostream &out, core::pose::Pose const &pose) const override

core::Real	report_sm (core::pose::Pose const &pose) const override
	used to report filter internals through a score or silent file More...

core::Real	compute_residue (core::pose::Pose const &pose, core::Size const seqpos) const

core::Real	compute (core::pose::Pose const &pose) const

	~NMerPSSMEnergyFilter () override

void	parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &, protocols::filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &) override

std::string	name () const override

Public Member Functions inherited from protocols::filters::Filter
	Filter ()

	Filter (std::string const &)

	Filter (Filter const &)

	~Filter () override

virtual std::string	get_type () const

std::string	get_user_defined_name () const

void	set_user_defined_name (std::string const &name)

virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...

virtual core::Real	score (core::pose::Pose &pose)

virtual bool	filter_provides_citation_info () const
	Does this filter provide information about how to cite it? More...

virtual utility::vector1 < basic::citation_manager::CitationCollectionCOP >	provide_citation_info () const
	Provide the citation. More...

virtual bool	filter_is_unpublished () const
	Does this filter indicate that it is unpublished (and, by extension, that the author should be included in publications resulting from it)? More...

virtual utility::vector1 < basic::citation_manager::UnpublishedModuleInfoCOP >	provide_authorship_info_for_unpublished () const
	Provide a list of authors and their e-mail addresses, as strings. More...

Static Public Member Functions
static std::string	class_name ()

static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)

Private Attributes
core::Real	score_type_threshold_

std::string	string_resnums_

core::scoring::methods::NMerPSSMEnergy	energy_method_

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Constructor & Destructor Documentation

protocols::simple_filters::NMerPSSMEnergyFilter::NMerPSSMEnergyFilter ( )

protocols::simple_filters::NMerPSSMEnergyFilter::NMerPSSMEnergyFilter	(	core::Real const	score_type_threshold,
		std::string	string_resnums
	)

References score_type_threshold_, and string_resnums_.

protocols::simple_filters::NMerPSSMEnergyFilter::~NMerPSSMEnergyFilter ( )

overridedefault

Member Function Documentation

bool protocols::simple_filters::NMerPSSMEnergyFilter::apply ( core::pose::Pose const & pose ) const

overridevirtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

References compute(), protocols::filters::Filter::score(), score_type_threshold_, and protocols::simple_filters::TR().

std::string protocols::simple_filters::NMerPSSMEnergyFilter::class_name ( )

static

Referenced by protocols::simple_filters::NMerPSSMEnergyFilterCreator::keyname(), name(), and provide_xml_schema().

filters::FilterOP protocols::simple_filters::NMerPSSMEnergyFilter::clone ( ) const

inlineoverridevirtual

Implements protocols::filters::Filter.

core::Real protocols::simple_filters::NMerPSSMEnergyFilter::compute ( core::pose::Pose const & pose ) const

References compute_residue(), core::pose::get_resnum_list_ordered(), protocols::filters::Filter::score(), core::pose::Pose::size(), and string_resnums_.

Referenced by apply(), report(), and report_sm().

core::Real protocols::simple_filters::NMerPSSMEnergyFilter::compute_residue	(	core::pose::Pose const &	pose,
		core::Size const	seqpos
	)		const

References energy_method_, core::scoring::nmer_pssm, core::pose::Pose::residue(), core::scoring::methods::NMerPSSMEnergy::residue_energy(), and core::pose::Pose::size().

Referenced by compute().

filters::FilterOP protocols::simple_filters::NMerPSSMEnergyFilter::fresh_instance ( ) const

inlineoverridevirtual

Implements protocols::filters::Filter.

std::string protocols::simple_filters::NMerPSSMEnergyFilter::name ( ) const

overridevirtual

Reimplemented from protocols::filters::Filter.

References class_name().

void protocols::simple_filters::NMerPSSMEnergyFilter::parse_my_tag	(	utility::tag::TagCOP	tag,
		basic::datacache::DataMap &	,
		protocols::filters::Filters_map const &	,
		protocols::moves::Movers_map const &	,
		core::pose::Pose const &
	)