#include <WaterFeatures.hh>

Inheritance diagram for protocols::features::WaterFeatures:

Public Member Functions
	WaterFeatures ()

	WaterFeatures (core::Real acc_dist_cutoff, core::Real don_dist_cutoff)

core::Real	acc_dist_cutoff () const

core::Real	don_dist_cutoff () const

void	acc_dist_cutoff (core::Real d)

void	don_dist_cutoff (core::Real d)

void	write_schema_to_db (utility::sql_database::sessionOP db_session) const override
	return string with class name More...

void	parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &data, protocols::filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &) override

utility::vector1< std::string >	features_reporter_dependencies () const override
	return the set of features reporters that are required to also already be extracted by the time this one is used. More...

core::Size	report_features (core::pose::Pose const &pose, utility::vector1< bool > const &, StructureID struct_id, utility::sql_database::sessionOP db_session) override
	collect all the feature data for the pose More...

std::string	type_name () const override

Public Member Functions inherited from protocols::features::FeaturesReporter
	FeaturesReporter ()

	~FeaturesReporter () override
	Automatically generated virtual destructor for class deriving directly from ReferenceCount. More...

virtual std::string	schema () const
	return sql statements that sets up the appropriate tables to contain the features. This should be removed once everything has been moved to the schema generator More...

core::Size	report_features (core::pose::Pose const &, StructureID, utility::sql_database::sessionOP)
	collect all the feature data for the pose. More...

virtual void	load_into_pose (utility::sql_database::sessionOP, StructureID, core::pose::Pose &)

virtual void	delete_record (StructureID, utility::sql_database::sessionOP)

void	set_relevant_residues_mode (RelevantResiduesMode::T setting)

RelevantResiduesMode::T	get_relevant_residues_mode () const

bool	check_relevant_residues (utility::vector1< bool > const &relevant_residues, core::Size res1) const

bool	check_relevant_residues (utility::vector1< bool > const &relevant_residues, core::Size res1, core::Size res2) const

bool	check_relevant_residues_range (utility::vector1< bool > const &relevant_residues, core::Size res1, core::Size res2) const

bool	check_relevant_residues (utility::vector1< bool > const &relevant_residues, utility::vector1< core::Size > const &residues) const

Static Public Member Functions
static std::string	class_name ()

static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)

Private Member Functions
void	write_water_hbond_geom_table_schema (utility::sql_database::sessionOP db_session) const
	generate the salt_bridges table schema More...

Private Attributes
core::Real	acc_dist_cutoff_

core::Real	don_dist_cutoff_

core::Real	ahd_cutoff_

utility::vector1< std::pair < std::string, std::string > >	names_for_water_

Additional Inherited Members
Protected Member Functions inherited from protocols::features::FeaturesReporter
std::string	find_tag (core::pose::Pose const &pose) const

void	delete_records_from_table (std::string const &table_name, StructureID struct_id, utility::sql_database::sessionOP db_session)
	a helper function for deleting data associated with a given structure from feature database WARNING table_name must be sanitized! More...

Protected Attributes inherited from protocols::features::FeaturesReporter
RelevantResiduesMode::T	relevant_residues_mode_

Constructor & Destructor Documentation

protocols::features::WaterFeatures::WaterFeatures ( )

protocols::features::WaterFeatures::WaterFeatures	(	core::Real	acc_dist_cutoff,
		core::Real	don_dist_cutoff
	)

Member Function Documentation

core::Real protocols::features::WaterFeatures::acc_dist_cutoff ( ) const

inline

References acc_dist_cutoff_.

void protocols::features::WaterFeatures::acc_dist_cutoff ( core::Real d )

inline

References acc_dist_cutoff_.

std::string protocols::features::WaterFeatures::class_name ( )

static

Referenced by provide_xml_schema(), protocols::features::WaterFeaturesCreator::type_name(), and type_name().

core::Real protocols::features::WaterFeatures::don_dist_cutoff ( ) const

inline

References don_dist_cutoff_.

void protocols::features::WaterFeatures::don_dist_cutoff ( core::Real d )

inline

References don_dist_cutoff_.

utility::vector1< std::string > protocols::features::WaterFeatures::features_reporter_dependencies ( ) const

overridevirtual

return the set of features reporters that are required to also already be extracted by the time this one is used.

Reimplemented from protocols::features::FeaturesReporter.

void protocols::features::WaterFeatures::parse_my_tag	(	utility::tag::TagCOP	tag,
		basic::datacache::DataMap &	data,
		protocols::filters::Filters_map const &	,
		protocols::moves::Movers_map const &	,
		core::pose::Pose const &
	)

overridevirtual

Reimplemented from protocols::features::FeaturesReporter.

References acc_dist_cutoff_, ahd_cutoff_, don_dist_cutoff_, names_for_water_, and protocols::features::TR().

void protocols::features::WaterFeatures::provide_xml_schema ( utility::tag::XMLSchemaDefinition & xsd )

static

References class_name(), and protocols::features::xsd_type_definition_w_attributes().

Referenced by protocols::features::WaterFeaturesCreator::provide_xml_schema().

core::Size protocols::features::WaterFeatures::report_features	(	core::pose::Pose const &	pose,
		utility::vector1< bool > const &	,
		StructureID	struct_id,
		utility::sql_database::sessionOP	db_session
	)