protocols::denovo_design::components::HelixSheetPairing Class Reference

#include <SegmentPairing.hh>

Inheritance diagram for protocols::denovo_design::components::HelixSheetPairing:

Public Member Functions
	HelixSheetPairing ()
	HelixSheetPairing (SegmentName const &helix, SegmentName const &s1, SegmentName const &s2)
	~HelixSheetPairing () override
SegmentPairingOP	clone () const override
PairingType	type () const override
std::string	pairing_string (StructureData const &sd) const override
Public Member Functions inherited from protocols::denovo_design::components::SegmentPairing
	SegmentPairing ()
	SegmentPairing (SegmentNames const &paired_segments)
	~SegmentPairing () override
void	parse_my_tag (utility::tag::Tag const &tag)
bool	has_segment (std::string const &segment) const
SegmentNames const &	segments () const
void	set_segments (std::string const &segments_str)
void	set_segments (SegmentNames const &segments)

Static Public Member Functions
static std::string	class_name ()
static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)
Static Public Member Functions inherited from protocols::denovo_design::components::SegmentPairing
static std::string	complex_type_name_for_pairing (std::string const &pairing_name)
static SegmentPairingOP	create (std::string const &type_name)
static std::string	get_strand_pairings (StructureData const &sd)
	Gets string for all strand pairings from a StructureData. More...
static std::string	get_helix_pairings (StructureData const &sd)
	Gets string for all helix pairings from a StructureData. More...
static std::string	get_hss_triplets (StructureData const &sd)
	Gets string for all helix-strand-strand triplets in a StructureData. More...
static ResiduePairs	get_strand_residue_pairs (StructureData const &sd)
	Gets pairs of residues involved in strand pairing. More...

Protected Member Functions
void	parse_tag (utility::tag::Tag const &tag) override
void	to_xml (utility::tag::Tag &tag) const override

Additional Inherited Members
Public Types inherited from protocols::denovo_design::components::SegmentPairing
enum	PairingType { HELIX = 1, STRAND = 2, HELIX_SHEET = 3, UNKNOWN }
Static Public Attributes inherited from protocols::denovo_design::components::SegmentPairing
static std::string	TAG_NAME = "Pairing"
Static Protected Member Functions inherited from protocols::denovo_design::components::SegmentPairing
static void	add_common_xml_elements (utility::tag::XMLSchemaDefinition &xsd, std::string const &class_name, std::string const &description, utility::tag::AttributeList &attlist)

Constructor & Destructor Documentation

protocols::denovo_design::components::HelixSheetPairing::HelixSheetPairing

(

)

protocols::denovo_design::components::HelixSheetPairing::HelixSheetPairing	(	SegmentName const &	helix,
		SegmentName const &	s1,
		SegmentName const &	s2
	)

protocols::denovo_design::components::HelixSheetPairing::~HelixSheetPairing ( )

inlineoverride

Member Function Documentation

static std::string protocols::denovo_design::components::HelixSheetPairing::class_name ( )

inlinestatic

Referenced by protocols::denovo_design::components::SegmentPairing::create(), protocols::denovo_design::architects::CompoundArchitect::define_pairing_group(), pairing_string(), provide_xml_schema(), and protocols::denovo_design::components::SegmentPairing::type_to_str().

SegmentPairingOP protocols::denovo_design::components::HelixSheetPairing::clone ( ) const

overridevirtual

Implements protocols::denovo_design::components::SegmentPairing.

std::string protocols::denovo_design::components::HelixSheetPairing::pairing_string ( StructureData const &  sd ) const

overridevirtual

Implements protocols::denovo_design::components::SegmentPairing.

References class_name(), core::sequence::end, protocols::loops::loop_closure::ccd::helix, protocols::denovo_design::components::Segment::safe(), protocols::denovo_design::components::StructureData::segment(), protocols::denovo_design::components::SegmentPairing::segments(), and protocols::denovo_design::components::StructureData::ss().

void protocols::denovo_design::components::HelixSheetPairing::parse_tag ( utility::tag::Tag const &  tag )

overrideprotectedvirtual

Implements protocols::denovo_design::components::SegmentPairing.

void protocols::denovo_design::components::HelixSheetPairing::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd )

static

References protocols::denovo_design::components::SegmentPairing::add_common_xml_elements(), and class_name().

Referenced by protocols::denovo_design::architects::CompoundArchitect::define_pairing_group().

void protocols::denovo_design::components::HelixSheetPairing::to_xml ( utility::tag::Tag &  tag ) const

overrideprotectedvirtual

Implements protocols::denovo_design::components::SegmentPairing.

PairingType protocols::denovo_design::components::HelixSheetPairing::type ( ) const

inlineoverridevirtual

Implements protocols::denovo_design::components::SegmentPairing.

References protocols::denovo_design::components::SegmentPairing::HELIX_SHEET.

---

The documentation for this class was generated from the following files:

• src/protocols/denovo_design/components/SegmentPairing.hh
• src/protocols/denovo_design/components/SegmentPairing.cc