local Namespace Reference

Variables
basic::options::BooleanOptionKey const	AvNAPSA_positive ("AvNAPSA_positive")
basic::options::BooleanOptionKey const	AvNAPSA_negative ("AvNAPSA_negative")
basic::options::BooleanOptionKey const	target_net_charge_active ("target_net_charge_active")
basic::options::IntegerOptionKey const	target_net_charge ("target_net_charge")
basic::options::IntegerOptionKey const	surface_atom_cutoff ("surface_atom_cutoff")
basic::options::IntegerOptionKey const	surface_residue_cutoff ("surface_residue_cutoff")
basic::options::BooleanOptionKey const	include_arg ("include_arg")
basic::options::BooleanOptionKey const	include_lys ("include_lys")
basic::options::BooleanOptionKey const	include_asp ("include_asp")
basic::options::BooleanOptionKey const	include_glu ("include_glu")
basic::options::RealOptionKey const	refweight_arg ("refweight_arg")
basic::options::RealOptionKey const	refweight_lys ("refweight_lys")
basic::options::RealOptionKey const	refweight_asp ("refweight_asp")
basic::options::RealOptionKey const	refweight_glu ("refweight_glu")
basic::options::BooleanOptionKey const	dont_mutate_glyprocys ("dont_mutate_glyprocys")
basic::options::BooleanOptionKey const	dont_mutate_correct_charge ("dont_mutate_correct_charge")
basic::options::BooleanOptionKey const	dont_mutate_hbonded_sidechains ("dont_mutate_hbonded_sidechains")
basic::options::BooleanOptionKey const	pre_packminpack ("pre_packminpack")
basic::options::IntegerOptionKey const	nstruct ("nstruct")
basic::options::BooleanOptionKey const	compare_residue_energies_all ("compare_residue_energies_all")
basic::options::BooleanOptionKey const	compare_residue_energies_mut ("compare_residue_energies_mut")
basic::options::FileOptionKey const	partner1 ("partner1")
basic::options::FileOptionKey const	partner2 ("partner2")
basic::options::FileOptionKey const	match_pdb ("match_pdb")
basic::options::IntegerOptionKey const	partner2_residue ("partner2_residue")
basic::options::BooleanOptionKey const	skip_sitegraft_repack ("skip_sitegraft_repack")

Variable Documentation

basic::options::BooleanOptionKey const local::AvNAPSA_negative("AvNAPSA_negative")

Referenced by supercharge::apply(), supercharge::AvNAPSA_values(), main(), and supercharge::set_resfile_AvNAPSA().

basic::options::BooleanOptionKey const local::AvNAPSA_positive("AvNAPSA_positive")

Referenced by supercharge::apply(), supercharge::AvNAPSA_values(), supercharge::design_supercharge_AvNAPSA(), main(), and supercharge::set_resfile_AvNAPSA().

basic::options::BooleanOptionKey const local::compare_residue_energies_all("compare_residue_energies_all")

Referenced by supercharge::apply(), supercharge::energy_comparison(), and main().

basic::options::BooleanOptionKey const local::compare_residue_energies_mut("compare_residue_energies_mut")

Referenced by supercharge::apply(), supercharge::energy_comparison(), and main().

basic::options::BooleanOptionKey const local::dont_mutate_correct_charge("dont_mutate_correct_charge")

Referenced by main(), and supercharge::set_resfile().

basic::options::BooleanOptionKey const local::dont_mutate_glyprocys("dont_mutate_glyprocys")

Referenced by main(), and supercharge::set_resfile().

basic::options::BooleanOptionKey const local::dont_mutate_hbonded_sidechains("dont_mutate_hbonded_sidechains")

Referenced by main(), and supercharge::set_resfile().

basic::options::BooleanOptionKey const local::include_arg("include_arg")

Referenced by supercharge::apply(), supercharge::design_supercharge(), main(), and supercharge::set_resfile().

basic::options::BooleanOptionKey const local::include_asp("include_asp")

Referenced by supercharge::apply(), supercharge::design_supercharge(), main(), and supercharge::set_resfile().

basic::options::BooleanOptionKey const local::include_glu("include_glu")

Referenced by supercharge::apply(), supercharge::design_supercharge(), main(), and supercharge::set_resfile().

basic::options::BooleanOptionKey const local::include_lys("include_lys")

Referenced by supercharge::apply(), supercharge::design_supercharge(), main(), and supercharge::set_resfile().

basic::options::FileOptionKey const local::match_pdb("match_pdb")

Referenced by main().

basic::options::IntegerOptionKey const local::nstruct("nstruct")

Referenced by add_rosetta_options_0(), supercharge::design_supercharge(), fill_required_options(), main(), rna_build_helix_test(), rna_design_test(), and FragmentAssemblyMover::run().

basic::options::FileOptionKey const local::partner1("partner1")

Referenced by main().

basic::options::FileOptionKey const local::partner2("partner2")

Referenced by main().

basic::options::IntegerOptionKey const local::partner2_residue("partner2_residue")

Referenced by main().

basic::options::BooleanOptionKey const local::pre_packminpack("pre_packminpack")

Referenced by main(), and supercharge::prepack_input_structure().

basic::options::RealOptionKey const local::refweight_arg("refweight_arg")

Referenced by main(), and supercharge::set_reference_energies().

basic::options::RealOptionKey const local::refweight_asp("refweight_asp")

Referenced by main(), and supercharge::set_reference_energies().

basic::options::RealOptionKey const local::refweight_glu("refweight_glu")

Referenced by main(), and supercharge::set_reference_energies().

basic::options::RealOptionKey const local::refweight_lys("refweight_lys")

Referenced by main(), and supercharge::set_reference_energies().

basic::options::BooleanOptionKey const local::skip_sitegraft_repack("skip_sitegraft_repack")

Referenced by main().

basic::options::IntegerOptionKey const local::surface_atom_cutoff("surface_atom_cutoff")

Referenced by main(), supercharge::set_resfile_AvNAPSA(), and supercharge::set_surface().

basic::options::IntegerOptionKey const local::surface_residue_cutoff("surface_residue_cutoff")

Referenced by main(), and supercharge::set_surface().

basic::options::IntegerOptionKey const local::target_net_charge("target_net_charge")

Referenced by supercharge::apply(), supercharge::design_supercharge(), main(), and supercharge::set_resfile_AvNAPSA().

basic::options::BooleanOptionKey const local::target_net_charge_active("target_net_charge_active")

Referenced by supercharge::apply(), supercharge::design_supercharge(), main(), and supercharge::set_resfile_AvNAPSA().