LoopAnalyzerFilter examines loop structures and packages extra scores into a Job object; maybe you can filter on its "LAM score" (not yet implemented) More...

#include <LoopAnalyzerFilter.hh>

Inheritance diagram for protocols::loops::filters::LoopAnalyzerFilter:

[legend]

Public Member Functions
	LoopAnalyzerFilter ()

	LoopAnalyzerFilter (protocols::loops::Loops const &loops, bool const tracer=false)
	loops is the loops object to say what to analyze. tracer controls whether output is dumped to a tracer or a Job object (for output with the Pose). More...

virtual	~LoopAnalyzerFilter ()

	LoopAnalyzerFilter (LoopAnalyzerFilter const &rhs)

bool	apply (core::pose::Pose const &pose) const override
	returns true if the structure passes the filter, false otherwise More...

core::Real	report_sm (core::pose::Pose const &pose) const override
	required for reporting score values More...

void	report (std::ostream &os, core::pose::Pose const &pose) const override
	allows printing data to a stream More...

std::string	get_name () const

void	parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &data, protocols::filters::Filters_map const &filters, protocols::moves::Movers_map const &movers, core::pose::Pose const &pose) override
	parse XML tag (to use this Filter in Rosetta Scripts) More...

protocols::filters::FilterOP	fresh_instance () const override
	required in the context of the parser/scripting scheme More...

protocols::filters::FilterOP	clone () const override
	required in the context of the parser/scripting scheme More...

void	set_loops (protocols::loops::LoopsCOP loops)
	set loops object, because public setters/getters are a rule More...

protocols::loops::LoopsCOP const &	get_loops (void) const
	get loops object, because public setters/getters are a rule More...

void	set_use_tracer (bool tracer)
	set tracer bool, because public setters/getters are a rule More...

bool	get_use_tracer (void) const
	get tracer bool, because public setters/getters are a rule More...

std::string	name () const override

Public Member Functions inherited from protocols::filters::Filter
	Filter ()

	Filter (std::string)

	Filter (Filter const &)

	~Filter () override

virtual std::string	get_type () const

std::string	get_user_defined_name () const

void	set_user_defined_name (std::string const &name)

virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...

virtual core::Real	score (core::pose::Pose &pose)

Static Public Member Functions
static std::string	class_name ()

static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)

Private Attributes
protocols::loops::LoopsCOP	loops_
	used to store a copy of the input loops More...

bool	tracer_
	output to tracer or PDB/silent file More...

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Detailed Description

LoopAnalyzerFilter examines loop structures and packages extra scores into a Job object; maybe you can filter on its "LAM score" (not yet implemented)

Constructor & Destructor Documentation

protocols::loops::filters::LoopAnalyzerFilter::LoopAnalyzerFilter ( )

Referenced by clone().

protocols::loops::filters::LoopAnalyzerFilter::LoopAnalyzerFilter	(	protocols::loops::Loops const &	loops,
		bool const	tracer = `false`
	)

loops is the loops object to say what to analyze. tracer controls whether output is dumped to a tracer or a Job object (for output with the Pose).

protocols::loops::filters::LoopAnalyzerFilter::~LoopAnalyzerFilter ( )

virtual

protocols::loops::filters::LoopAnalyzerFilter::LoopAnalyzerFilter ( LoopAnalyzerFilter const & rhs )

Member Function Documentation

bool protocols::loops::filters::LoopAnalyzerFilter::apply ( core::pose::Pose const & pose ) const

overridevirtual

returns true if the structure passes the filter, false otherwise

Calculates a bunch of loop-geometry related score terms and dumps them to tracer / Job object for output with the Pose.

Implements protocols::filters::Filter.

std::string protocols::loops::filters::LoopAnalyzerFilter::class_name ( )

static

Referenced by get_name(), protocols::loops::filters::LoopAnalyzerFilterCreator::keyname(), name(), and provide_xml_schema().

protocols::filters::FilterOP protocols::loops::filters::LoopAnalyzerFilter::clone ( ) const

overridevirtual

required in the context of the parser/scripting scheme

Implements protocols::filters::Filter.

References LoopAnalyzerFilter().

protocols::filters::FilterOP protocols::loops::filters::LoopAnalyzerFilter::fresh_instance ( ) const

overridevirtual

required in the context of the parser/scripting scheme

Implements protocols::filters::Filter.

protocols::loops::LoopsCOP const & protocols::loops::filters::LoopAnalyzerFilter::get_loops ( void ) const

get loops object, because public setters/getters are a rule

References loops_.

Referenced by report_sm().

std::string protocols::loops::filters::LoopAnalyzerFilter::get_name ( ) const

References class_name().

bool protocols::loops::filters::LoopAnalyzerFilter::get_use_tracer ( void ) const

inline

get tracer bool, because public setters/getters are a rule

References tracer_.

Referenced by report_sm().

std::string protocols::loops::filters::LoopAnalyzerFilter::name ( ) const

overridevirtual

Reimplemented from protocols::filters::Filter.

References class_name().

void protocols::loops::filters::LoopAnalyzerFilter::parse_my_tag	(	utility::tag::TagCOP	tag,
		basic::datacache::DataMap &	data,
		protocols::filters::Filters_map const &	filters,
		protocols::moves::Movers_map const &	movers,
		core::pose::Pose const &	pose
	)