#include <MotifHashRigidScore.hh>
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| MotifHashRigidScore (core::pose::Pose const &pose1, core::pose::Pose const &pose2) |
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virtual | ~MotifHashRigidScore () |
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core::Real | score (Xforms const &x1, Xforms const &x2) const |
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core::Real | score_meta (Xforms const &x1, Xforms const &x2, int &nsheet, Real &rawscore, Real &sselem_score, Real &coverage, Real &res_score, Real &sheetsc, int &nres, int &Nhh, int &Nee, int &Neh, int &Nh, int &Ne, int &Nl) const |
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int | dump_matching_motifs (core::pose::Pose const &pose1, core::pose::Pose const &pose2, std::ostream &out, int &count, core::pose::xyzStripeHashPoseCOP clash_check=NULL, bool print=false) const |
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int | dump_matching_motifs (Xforms const &x1s, Xforms const &x2s, std::ostream &out, core::pose::xyzStripeHashPoseCOP clash_check=NULL, bool print=false) const |
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std::string | type () const |
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void | show (std::ostream &out, int width=10) const |
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void | show (std::ostream &out, Xforms const &x1, Xforms const &x2, int width=10) const |
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void | show (std::ostream &out, Xforms const &x1, Xforms const &x2, core::pose::xyzStripeHashPoseCOP clash_check, int width=10) const |
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core::scoring::motif::MotifHashCOP | motif_hash () const |
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core::Size | nhashlookups () const |
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| ~RigidScore () override=default |
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typedef std::map< std::string,
Real > | Stats |
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typedef std::pair< int, int > | intint |
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typedef std::pair
< numeric::xyzVector< float >
, int > | VecIR |
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References bbx1_, bbx2_, protocols::sic_dock::scores::C(), protocols::sic_dock::scores::CA(), core::conformation::Residue::has(), hash_pose1_, core::scoring::dssp::Dssp::insert_ss_into_pose_no_IG_helix(), MAX_MOTIF_D2, mh_, protocols::sic_dock::scores::N(), pose1_, pose2_, core::pose::PoseCoordPickMode_CBorCA, reshash_, core::pose::Pose::residue(), reslist_, core::pose::Pose::secstruct(), core::pose::Pose::size(), ss1_, ss2_, xs_, xsee_, xseh_, xshe_, xshh_, xspp_, and core::conformation::Residue::xyz().
protocols::sic_dock::scores::MotifHashRigidScore::~MotifHashRigidScore |
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virtual |
protocols::sic_dock::scores::MotifHashRigidScore::MotifHashRigidScore |
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inlineprivate |
core::Size protocols::sic_dock::scores::MotifHashRigidScore::nhashlookups |
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const |
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inline |
core::Real protocols::sic_dock::scores::MotifHashRigidScore::score |
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Xforms const & |
x1, |
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Xforms const & |
x2 |
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virtual |
core::Real protocols::sic_dock::scores::MotifHashRigidScore::score_meta |
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Xforms const & |
x1, |
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Xforms const & |
x2, |
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int & |
nsheet, |
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Real & |
rawscore, |
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Real & |
sselem_score, |
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Real & |
coverage, |
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Real & |
res_score, |
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Real & |
sheetsc, |
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int & |
nres, |
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int & |
Nhh, |
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int & |
Nee, |
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int & |
Neh, |
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int & |
Nh, |
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int & |
Ne, |
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int & |
Nl |
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References bbx1_, bbx2_, protocols::sic_dock::scores::get_rt6(), hash_pose1_, nhashlookups_, pose1_, pose2_, reshash_, reslist_, core::pose::Pose::secstruct(), ss1_, ss2_, xs_, xsee_, xseh_, xshe_, xshh_, and xspp_.
Referenced by score().
void protocols::sic_dock::scores::MotifHashRigidScore::show |
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std::ostream & |
out, |
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int |
width = 10 |
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virtual |
void protocols::sic_dock::scores::MotifHashRigidScore::show |
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std::ostream & |
out, |
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Xforms const & |
x1, |
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Xforms const & |
x2, |
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int |
width = 10 |
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std::string protocols::sic_dock::scores::MotifHashRigidScore::type |
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const |
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inlinevirtual |
numeric::Xforms protocols::sic_dock::scores::MotifHashRigidScore::bbx1_ |
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private |
numeric::Xforms protocols::sic_dock::scores::MotifHashRigidScore::bbx2_ |
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bool protocols::sic_dock::scores::MotifHashRigidScore::hash_pose1_ |
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core::Size protocols::sic_dock::scores::MotifHashRigidScore::nhashlookups_ |
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mutableprivate |
utility::vector1< std::pair<numeric::xyzVector<float>,int> > protocols::sic_dock::scores::MotifHashRigidScore::reslist_ |
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std::string protocols::sic_dock::scores::MotifHashRigidScore::ss1_ |
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std::string protocols::sic_dock::scores::MotifHashRigidScore::ss2_ |
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private |
The documentation for this class was generated from the following files: