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Rosetta
3.8
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#include <RestrictToInterfaceOperation.hh>
Public Types | |
typedef RestrictOperationsBase | parent |
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typedef core::pack::task::operation::TaskOperation | TaskOperation |
typedef core::pack::task::operation::TaskOperationOP | TaskOperationOP |
typedef TaskOperation | parent |
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typedef utility::tag::TagCOP | TagCOP |
typedef basic::datacache::DataMap | DataMap |
typedef pose::Pose | Pose |
Public Member Functions | |
RestrictToInterfaceOperation (core::Size upper_chain=1, core::Size lower_chain=2) | |
this ctor will generate the calculator for you (may use defaults) More... | |
RestrictToInterfaceOperation (std::string const &calculator) | |
virtual | ~RestrictToInterfaceOperation () |
virtual TaskOperationOP | clone () const |
virtual void | apply (core::pose::Pose const &, core::pack::task::PackerTask &) const |
Change a packer task in some way. The input pose is the one to which the input task will be later applied. More... | |
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RestrictOperationsBase () | |
virtual | ~RestrictOperationsBase () |
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virtual | ~TaskOperation () |
virtual void | parse_tag (TagCOP, DataMap &) |
Used to parse an xml-like tag to load parameters and properties. More... | |
Static Public Member Functions | |
static void | provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd) |
static std::string | keyname () |
Private Member Functions | |
void | make_calculator (core::Size upper_chain, core::Size lower_chain) |
constructor helper function - makes the PoseMetricCalculator More... | |
void | make_name (core::Size upper_chain, core::Size lower_chain) |
constructor helper function - names the PoseMetricCalculator More... | |
Private Attributes | |
std::string | calculator_name_ |
Additional Inherited Members | |
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void | run_calculator (core::pose::Pose const &pose, std::string const &calculator, std::string const &calculation, utility::vector1_bool &residues) const |
this is the only real function - it takes a calculator name and calculation, and a PackerTask-compatible vector, and flips booleans in the vector according to the calculator More... | |
this class is a TaskOperation to prevent repacking of residues not near an interface.
typedef RestrictOperationsBase protocols::toolbox::task_operations::RestrictToInterfaceOperation::parent |
protocols::toolbox::task_operations::RestrictToInterfaceOperation::RestrictToInterfaceOperation | ( | core::Size | upper_chain = 1 , |
core::Size | lower_chain = 2 |
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this ctor will generate the calculator for you (may use defaults)
References make_calculator().
Referenced by clone().
protocols::toolbox::task_operations::RestrictToInterfaceOperation::RestrictToInterfaceOperation | ( | std::string const & | calculator | ) |
this ctor assumes a pregenerated calculator - if you want a particular non-default cutoff distance
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virtual |
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virtual |
Change a packer task in some way. The input pose is the one to which the input task will be later applied.
Implements protocols::toolbox::task_operations::RestrictOperationsBase.
References calculator_name_, protocols::antibody::design::repack, core::pack::task::PackerTask::restrict_to_residues(), protocols::toolbox::task_operations::RestrictOperationsBase::run_calculator(), and core::pose::Pose::size().
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virtual |
be warned if you use clone that you'll not get a new interface calculator
Implements protocols::toolbox::task_operations::RestrictOperationsBase.
References RestrictToInterfaceOperation().
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inlinestatic |
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private |
constructor helper function - makes the PoseMetricCalculator
private helper function to make calculator - runs in the ctor
References calculator_name_, and make_name().
Referenced by RestrictToInterfaceOperation().
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private |
constructor helper function - names the PoseMetricCalculator
private helper function to name calculator- runs in the ctor
References calculator_name_, and core::id::to_string().
Referenced by make_calculator().
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static |
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private |
Referenced by apply(), make_calculator(), and make_name().