Rosetta
3.8
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#include <SSElementBisectddGFilter.hh>
Public Types | |
typedef protocols::filters::Filter | Super |
typedef protocols::filters::Filter | Filter |
typedef protocols::filters::FilterOP | FilterOP |
typedef core::Real | Real |
typedef core::pose::Pose | Pose |
typedef std::string | String |
typedef utility::tag::TagCOP | TagCOP |
typedef protocols::filters::Filters_map | Filters_map |
typedef basic::datacache::DataMap | DataMap |
typedef protocols::moves::Movers_map | Movers_map |
Public Member Functions | |
SSElementBisectddGFilter () | |
SSElementBisectddGFilter (SSElementBisectddGFilter const &rval) | |
virtual | ~SSElementBisectddGFilter () |
filters::FilterOP | clone () const override |
filters::FilterOP | fresh_instance () const override |
void | filtered_value (Real const &value) |
Real | report_sm (const Pose &pose) const override |
used to report filter internals through a score or silent file More... | |
void | report (std::ostream &out, const Pose &pose) const override |
protocols::loops::Loops | get_ss_elements (const Pose &pose) const |
get ss_elements More... | |
Real | get_ddg_bisect_score (Size element, protocols::loops::Loops ssElements, const Pose &pose) const |
Real | compute (const Pose &pose) const |
bool | apply (const Pose &pose) const override |
Returns true if the given pose passes the filter, false otherwise. More... | |
void | parse_my_tag (TagCOP tag, basic::datacache::DataMap &data, filters::Filters_map const &, Movers_map const &, Pose const &) override |
parse xml More... | |
std::string | name () const override |
Public Member Functions inherited from protocols::filters::Filter | |
Filter () | |
Filter (std::string) | |
Filter (Filter const &) | |
~Filter () override | |
virtual std::string | get_type () const |
std::string | get_user_defined_name () const |
void | set_user_defined_name (std::string const &name) |
virtual void | clear () |
used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More... | |
virtual core::Real | score (core::pose::Pose &pose) |
Static Public Member Functions | |
static std::string | class_name () |
static void | provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd) |
Private Attributes | |
core::scoring::ScoreFunctionOP | scorefxn_ |
Real | filtered_value_ |
Size | ignore_terminal_SS_ |
bool | only_n_term_ |
bool | only_c_term_ |
Real | threshold_ |
bool | report_avg_ |
Additional Inherited Members | |
Protected Attributes inherited from protocols::filters::Filter | |
std::string | scorename_ |
typedef basic::datacache::DataMap protocols::simple_filters::SSElementBisectddGFilter::DataMap |
typedef protocols::filters::Filters_map protocols::simple_filters::SSElementBisectddGFilter::Filters_map |
typedef protocols::moves::Movers_map protocols::simple_filters::SSElementBisectddGFilter::Movers_map |
typedef std::string protocols::simple_filters::SSElementBisectddGFilter::String |
typedef utility::tag::TagCOP protocols::simple_filters::SSElementBisectddGFilter::TagCOP |
protocols::simple_filters::SSElementBisectddGFilter::SSElementBisectddGFilter | ( | ) |
Referenced by clone(), and fresh_instance().
protocols::simple_filters::SSElementBisectddGFilter::SSElementBisectddGFilter | ( | SSElementBisectddGFilter const & | rval | ) |
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virtual |
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overridevirtual |
Returns true if the given pose passes the filter, false otherwise.
Implements protocols::filters::Filter.
References compute(), threshold_, and protocols::simple_filters::tr().
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static |
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inlineoverridevirtual |
Implements protocols::filters::Filter.
References SSElementBisectddGFilter().
References get_ddg_bisect_score(), get_ss_elements(), ignore_terminal_SS_, only_c_term_, only_n_term_, report_avg_, protocols::filters::Filter::score(), and protocols::loops::Loops::size().
Referenced by apply(), report(), and report_sm().
void protocols::simple_filters::SSElementBisectddGFilter::filtered_value | ( | Real const & | value | ) |
References filtered_value_.
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inlineoverridevirtual |
Implements protocols::filters::Filter.
References SSElementBisectddGFilter().
Real protocols::simple_filters::SSElementBisectddGFilter::get_ddg_bisect_score | ( | Size | element, |
protocols::loops::Loops | ssElements, | ||
const Pose & | pose | ||
) | const |
protocols::loops::Loops protocols::simple_filters::SSElementBisectddGFilter::get_ss_elements | ( | const Pose & | pose | ) | const |
get ss_elements
References protocols::loops::Loops::add_loop(), protocols::simple_filters::dssp(), core::scoring::dssp::Dssp::dssp_reduced(), core::scoring::dssp::Dssp::get_dssp_secstruct(), core::pose::symmetry::is_symmetric(), core::pose::Pose::size(), and core::pose::symmetry::symmetry_info().
Referenced by compute().
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overridevirtual |
Reimplemented from protocols::filters::Filter.
References class_name().
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overridevirtual |
parse xml
Reimplemented from protocols::filters::Filter.
References ignore_terminal_SS_, only_c_term_, only_n_term_, protocols::rosetta_scripts::parse_score_function(), report_avg_, scorefxn_, and threshold_.
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static |
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overridevirtual |
Reimplemented from protocols::filters::Filter.
References compute(), and report_avg_.
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overridevirtual |
used to report filter internals through a score or silent file
Reimplemented from protocols::filters::Filter.
References compute().
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private |
Referenced by filtered_value().
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private |
Referenced by compute(), and parse_my_tag().
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private |
Referenced by compute(), and parse_my_tag().
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private |
Referenced by compute(), and parse_my_tag().
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private |
Referenced by compute(), parse_my_tag(), and report().
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private |
Referenced by get_ddg_bisect_score(), and parse_my_tag().
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private |
Referenced by apply(), and parse_my_tag().