#include <FNatFilter.hh>

Inheritance diagram for protocols::protein_interface_design::filters::FNatFilter:

Public Member Functions
	FNatFilter ()

	FNatFilter (protocols::docking::DockJumps const movable_jumps, core::Real const threshold, core::pose::PoseOP reference_pose)

bool	apply (core::pose::Pose const &pose) const override
	Returns true if the given pose passes the filter, false otherwise. More...

protocols::filters::FilterOP	clone () const override

protocols::filters::FilterOP	fresh_instance () const override

void	report (std::ostream &out, core::pose::Pose const &pose) const override

core::Real	report_sm (core::pose::Pose const &pose) const override
	used to report filter internals through a score or silent file More...

core::Real	compute (core::pose::Pose const &pose) const

virtual	~FNatFilter ()

void	parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &data_map, protocols::filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &reference_pose) override

std::string	name () const override

Public Member Functions inherited from protocols::filters::Filter
	Filter ()

	Filter (std::string)

	Filter (Filter const &)

	~Filter () override

virtual std::string	get_type () const

std::string	get_user_defined_name () const

void	set_user_defined_name (std::string const &name)

virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...

virtual core::Real	score (core::pose::Pose &pose)

Static Public Member Functions
static std::string	class_name ()

static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)

Private Attributes
core::Real	threshold_

core::pose::PoseOP	reference_pose_

protocols::docking::DockJumps	movable_jumps_

core::scoring::ScoreFunctionOP	scorefxn_

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Constructor & Destructor Documentation

protocols::protein_interface_design::filters::FNatFilter::FNatFilter ( )

Referenced by clone(), and fresh_instance().

protocols::protein_interface_design::filters::FNatFilter::FNatFilter	(	protocols::docking::DockJumps const	movable_jumps,
		core::Real const	threshold,
		core::pose::PoseOP	reference_pose
	)

protocols::protein_interface_design::filters::FNatFilter::~FNatFilter ( )

virtual

Member Function Documentation

bool protocols::protein_interface_design::filters::FNatFilter::apply ( core::pose::Pose const & pose ) const

overridevirtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

References compute(), threshold_, and protocols::protein_interface_design::filters::TR().

std::string protocols::protein_interface_design::filters::FNatFilter::class_name ( )

static

Referenced by protocols::protein_interface_design::filters::FNatFilterCreator::keyname(), name(), and provide_xml_schema().

protocols::filters::FilterOP protocols::protein_interface_design::filters::FNatFilter::clone ( ) const

overridevirtual

Implements protocols::filters::Filter.

References FNatFilter().

core::Real protocols::protein_interface_design::filters::FNatFilter::compute ( core::pose::Pose const & pose ) const

References protocols::docking::calc_Fnat(), movable_jumps_, reference_pose_, and scorefxn_.

Referenced by apply(), report(), and report_sm().

protocols::filters::FilterOP protocols::protein_interface_design::filters::FNatFilter::fresh_instance ( ) const

inlineoverridevirtual

Implements protocols::filters::Filter.

References FNatFilter().

std::string protocols::protein_interface_design::filters::FNatFilter::name ( ) const

overridevirtual

Reimplemented from protocols::filters::Filter.

References class_name().

void protocols::protein_interface_design::filters::FNatFilter::parse_my_tag	(	utility::tag::TagCOP	tag,
		basic::datacache::DataMap &	data_map,
		protocols::filters::Filters_map const &	,
		protocols::moves::Movers_map const &	,
		core::pose::Pose const &	reference_pose
	)

overridevirtual

Reimplemented from protocols::filters::Filter.

References protocols::rosetta_scripts::get_score_function_name(), movable_jumps_, protocols::rosetta_scripts::parse_score_function(), core::import_pose::PDB_file, core::import_pose::pose_from_file(), reference_pose_, protocols::rosetta_scripts::saved_reference_pose(), scorefxn_, threshold_, and protocols::protein_interface_design::filters::TR().

void protocols::protein_interface_design::filters::FNatFilter::provide_xml_schema ( utility::tag::XMLSchemaDefinition & xsd )

static

References protocols::rosetta_scripts::attributes_for_parse_score_function(), protocols::rosetta_scripts::attributes_for_saved_reference_pose(), class_name(), and protocols::filters::xsd_type_definition_w_attributes().

Referenced by protocols::protein_interface_design::filters::FNatFilterCreator::provide_xml_schema().

void protocols::protein_interface_design::filters::FNatFilter::report	(	std::ostream &	out,
		core::pose::Pose const &	pose
	)		const

overridevirtual

Reimplemented from protocols::filters::Filter.

References compute().

core::Real protocols::protein_interface_design::filters::FNatFilter::report_sm ( core::pose::Pose const & ) const

overridevirtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

References compute().

Member Data Documentation

protocols::docking::DockJumps protocols::protein_interface_design::filters::FNatFilter::movable_jumps_

private

Referenced by compute(), and parse_my_tag().

core::pose::PoseOP protocols::protein_interface_design::filters::FNatFilter::reference_pose_

private

Referenced by compute(), and parse_my_tag().

core::scoring::ScoreFunctionOP protocols::protein_interface_design::filters::FNatFilter::scorefxn_

private

Referenced by compute(), and parse_my_tag().

core::Real protocols::protein_interface_design::filters::FNatFilter::threshold_

private

Referenced by apply(), and parse_my_tag().

The documentation for this class was generated from the following files:

src/protocols/protein_interface_design/filters/FNatFilter.hh
src/protocols/protein_interface_design/filters/FNatFilter.cc

Public Member Functions

Static Public Member Functions

Private Attributes

Additional Inherited Members

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation