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Rosetta
3.8
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#include <ParallelBetaPairingPreferenceFilter.hh>
Public Types | |
typedef protocols::filters::Filter | Super |
typedef core::Size | Size |
typedef core::Real | Real |
typedef core::chemical::AA | AA |
typedef protocols::filters::Filter | Filter |
typedef std::string | String |
typedef protocols::filters::FilterOP | FilterOP |
typedef core::pose::Pose | Pose |
typedef utility::tag::TagCOP | TagCOP |
typedef protocols::filters::Filters_map | Filters_map |
typedef basic::datacache::DataMap | DataMap |
typedef protocols::moves::Movers_map | Movers_map |
Public Member Functions | |
ParallelBetaPairingPreferenceFilter () | |
ParallelBetaPairingPreferenceFilter (ParallelBetaPairingPreferenceFilter const &rval) | |
virtual | ~ParallelBetaPairingPreferenceFilter () |
FilterOP | clone () const override |
FilterOP | fresh_instance () const override |
void | filter_value (Real const value) |
Real | compute (Pose const &pose) const |
compute number of contacts More... | |
Real | score_pairmatrix (AA aa1, AA aa2) const |
refer score of residue pair More... | |
Real | report_sm (Pose const &pose) const override |
used to report score More... | |
void | report (std::ostream &out, Pose const &pose) const override |
used to report score More... | |
bool | apply (Pose const &pose) const override |
Returns true if the given pose passes the filter, false otherwise. More... | |
virtual void | parse_my_tag (TagCOP tag, basic::datacache::DataMap &, Filters_map const &, Movers_map const &, Pose const &) override |
parse xml More... | |
std::string | name () const override |
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Filter () | |
Filter (std::string) | |
Filter (Filter const &) | |
~Filter () override | |
virtual std::string | get_type () const |
std::string | get_user_defined_name () const |
void | set_user_defined_name (std::string const &name) |
virtual void | clear () |
used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More... | |
virtual core::Real | score (core::pose::Pose &pose) |
Static Public Member Functions | |
static std::string | class_name () |
static void | provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd) |
Private Attributes | |
Real | filter_value_ |
utility::vector1 < utility::vector1< Real > > | score_pairmatrix_ |
bool | verbose_ |
Additional Inherited Members | |
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std::string | scorename_ |
typedef basic::datacache::DataMap protocols::fldsgn::filters::ParallelBetaPairingPreferenceFilter::DataMap |
typedef protocols::filters::Filter protocols::fldsgn::filters::ParallelBetaPairingPreferenceFilter::Filter |
typedef protocols::filters::FilterOP protocols::fldsgn::filters::ParallelBetaPairingPreferenceFilter::FilterOP |
typedef protocols::filters::Filters_map protocols::fldsgn::filters::ParallelBetaPairingPreferenceFilter::Filters_map |
typedef protocols::moves::Movers_map protocols::fldsgn::filters::ParallelBetaPairingPreferenceFilter::Movers_map |
typedef std::string protocols::fldsgn::filters::ParallelBetaPairingPreferenceFilter::String |
typedef protocols::filters::Filter protocols::fldsgn::filters::ParallelBetaPairingPreferenceFilter::Super |
typedef utility::tag::TagCOP protocols::fldsgn::filters::ParallelBetaPairingPreferenceFilter::TagCOP |
protocols::fldsgn::filters::ParallelBetaPairingPreferenceFilter::ParallelBetaPairingPreferenceFilter | ( | ) |
References core::chemical::aa_from_oneletter_code(), core::chemical::aa_pro, and score_pairmatrix_.
Referenced by clone(), and fresh_instance().
protocols::fldsgn::filters::ParallelBetaPairingPreferenceFilter::ParallelBetaPairingPreferenceFilter | ( | ParallelBetaPairingPreferenceFilter const & | rval | ) |
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inlinevirtual |
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overridevirtual |
Returns true if the given pose passes the filter, false otherwise.
Implements protocols::filters::Filter.
References compute(), filter_value_, and protocols::filters::Filter::score().
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static |
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inlineoverridevirtual |
Implements protocols::filters::Filter.
References ParallelBetaPairingPreferenceFilter().
ParallelBetaPairingPreferenceFilter::Real protocols::fldsgn::filters::ParallelBetaPairingPreferenceFilter::compute | ( | Pose const & | pose | ) | const |
compute number of contacts
References core::pose::Pose::aa(), protocols::fldsgn::topology::calc_strand_pairing_set(), protocols::simple_filters::dssp(), core::chemical::oneletter_code_from_aa(), protocols::filters::Filter::score(), score_pairmatrix(), core::pose::Pose::size(), protocols::fldsgn::TR(), and verbose_.
Referenced by apply(), report(), and report_sm().
void protocols::fldsgn::filters::ParallelBetaPairingPreferenceFilter::filter_value | ( | Real const | value | ) |
References filter_value_.
Referenced by parse_my_tag().
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inlineoverridevirtual |
Implements protocols::filters::Filter.
References ParallelBetaPairingPreferenceFilter().
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overridevirtual |
Reimplemented from protocols::filters::Filter.
References class_name().
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overridevirtual |
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static |
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overridevirtual |
used to report score
report filter results
Reimplemented from protocols::filters::Filter.
References compute().
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overridevirtual |
used to report score
return filter value
Reimplemented from protocols::filters::Filter.
References compute().
ParallelBetaPairingPreferenceFilter::Real protocols::fldsgn::filters::ParallelBetaPairingPreferenceFilter::score_pairmatrix | ( | AA | aa1, |
AA | aa2 | ||
) | const |
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private |
Referenced by apply(), and filter_value().
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private |
Referenced by ParallelBetaPairingPreferenceFilter(), and score_pairmatrix().
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private |
Referenced by compute(), and parse_my_tag().