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Rosetta
3.8
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Functions | |
void | add_virtual_res (core::pose::Pose &pose, bool set_res_as_root) |
void | add_another_virtual_res (core::pose::Pose &pose) |
void | rotate_into_nucleobase_frame (core::pose::Pose &pose) |
void | rotate_into_phosphate_frame (core::pose::Pose &pose, Size const n, bool const center_on_OP2) |
Real | centroid_dist (core::pose::Pose &pose, bool const sample_another_adenosine_) |
Real | sample_all_rotations_at_jump (pose::Pose &pose, Size const num_jump, scoring::ScoreFunctionOP scorefxn) |
Real | do_scoring (pose::Pose &pose, scoring::ScoreFunctionOP scorefxn, bool const &sample_rotations, Size const probe_jump_num) |
void | do_xy_scan (pose::Pose &pose, scoring::ScoreFunctionOP scorefxn, std::string const &outfile, Real const z, Size const probe_jump_num, Real const box_bins, Real const translation_increment, bool const sample_rotations) |
void protocols::toolbox::sample_around::add_another_virtual_res | ( | core::pose::Pose & | pose | ) |
void protocols::toolbox::sample_around::add_virtual_res | ( | core::pose::Pose & | pose, |
bool | set_res_as_root | ||
) |
References core::chemical::aa_vrt, core::pose::Pose::append_residue_by_jump(), core::conformation::ResidueFactory::create_residue(), core::pose::Pose::fold_tree(), core::kinematics::FoldTree::reorder(), core::pose::Pose::residue(), core::kinematics::FoldTree::root(), core::pose::Pose::size(), and core::pose::virtual_type_for_pose().
core::Real protocols::toolbox::sample_around::centroid_dist | ( | core::pose::Pose & | pose, |
bool const | sample_another_adenosine_ | ||
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References core::chemical::rna::get_rna_base_centroid(), and core::pose::Pose::residue().
core::Real protocols::toolbox::sample_around::do_scoring | ( | pose::Pose & | pose, |
scoring::ScoreFunctionOP | scorefxn, | ||
bool const & | sample_rotations, | ||
Size const | probe_jump_num | ||
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References sample_all_rotations_at_jump().
Referenced by do_xy_scan().
void protocols::toolbox::sample_around::do_xy_scan | ( | pose::Pose & | pose, |
scoring::ScoreFunctionOP | scorefxn, | ||
std::string const & | outfile, | ||
Real const | z, | ||
Size const | probe_jump_num, | ||
Real const | box_bins, | ||
Real const | translation_increment, | ||
bool const | sample_rotations | ||
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void protocols::toolbox::sample_around::rotate_into_nucleobase_frame | ( | core::pose::Pose & | pose | ) |
void protocols::toolbox::sample_around::rotate_into_phosphate_frame | ( | core::pose::Pose & | pose, |
Size const | n, | ||
bool const | center_on_OP2 | ||
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core::Real protocols::toolbox::sample_around::sample_all_rotations_at_jump | ( | pose::Pose & | pose, |
Size const | num_jump, | ||
scoring::ScoreFunctionOP | scorefxn | ||
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