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Rosetta
3.8
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: taskop to oversample rotamers that make good interactions with a (set of) specified target residue(s) similar to Rosetta 2.x rotamer explosion More...
#include <InteractingRotamerExplosion.hh>
Public Types | |
typedef core::pack::task::operation::TaskOperation | parent |
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typedef utility::tag::TagCOP | TagCOP |
typedef basic::datacache::DataMap | DataMap |
typedef pose::Pose | Pose |
Public Member Functions | |
InteractingRotamerExplosion () | |
virtual | ~InteractingRotamerExplosion () |
virtual core::pack::task::operation::TaskOperationOP | clone () const |
Create another task operation of the type matching the most-derived version of the class. More... | |
virtual void | apply (core::pose::Pose const &pose, core::pack::task::PackerTask &task) const |
restricts to repacking all residues outside of design_shell_ around each residue More... | |
virtual void | parse_tag (TagCOP tag, DataMap &datamap) |
Used to parse an xml-like tag to load parameters and properties. More... | |
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virtual | ~TaskOperation () |
Static Public Member Functions | |
static void | provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd) |
static std::string | keyname () |
Private Attributes | |
std::string | string_target_seqpos_ |
core::Real | score_cutoff_ |
core::Size | ex_level_ |
bool | debug_ |
core::Real | exclude_radius_ |
: taskop to oversample rotamers that make good interactions with a (set of) specified target residue(s) similar to Rosetta 2.x rotamer explosion
typedef core::pack::task::operation::TaskOperation protocols::toolbox::task_operations::InteractingRotamerExplosion::parent |
protocols::toolbox::task_operations::InteractingRotamerExplosion::InteractingRotamerExplosion | ( | ) |
Referenced by clone().
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virtual |
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restricts to repacking all residues outside of design_shell_ around each residue
Implements core::pack::task::operation::TaskOperation.
References core::pack::task::ResidueLevelTask::append_rotamerset_operation(), core::conformation::Residue::atom(), debug_, ex_level_, exclude_radius_, core::pose::get_resnum_list(), core::chemical::ResidueType::is_protein(), core::conformation::Residue::nbr_atom(), core::pack::task::PackerTask::nonconst_residue_task(), core::pose::Pose::pdb_info(), core::pose::Pose::residue(), core::pose::Pose::residue_type(), score_cutoff_, core::pose::Pose::size(), string_target_seqpos_, core::id::to_string(), protocols::toolbox::tr(), and protocols::kinmatch::xyz().
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virtual |
Create another task operation of the type matching the most-derived version of the class.
Implements core::pack::task::operation::TaskOperation.
References InteractingRotamerExplosion().
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inlinestatic |
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virtual |
Used to parse an xml-like tag to load parameters and properties.
Reimplemented from core::pack::task::operation::TaskOperation.
References debug_, ex_level_, exclude_radius_, score_cutoff_, and string_target_seqpos_.
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static |
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private |
Referenced by apply(), and parse_tag().
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private |
Referenced by apply(), and parse_tag().
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private |
Referenced by apply(), and parse_tag().
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private |
Referenced by apply(), and parse_tag().
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private |
Referenced by apply(), and parse_tag().