protocols::protein_interface_design::filters::BindingStrainFilter Class Reference

#include <BindingStrainFilter.hh>

Inheritance diagram for protocols::protein_interface_design::filters::BindingStrainFilter:

Public Member Functions
	BindingStrainFilter ()
	default ctor More...
bool	apply (core::pose::Pose const &pose) const override
	Constructor with a single target residue. More...
void	report (std::ostream &out, core::pose::Pose const &pose) const override
core::Real	report_sm (core::pose::Pose const &pose) const override
	used to report filter internals through a score or silent file More...
protocols::filters::FilterOP	clone () const override
protocols::filters::FilterOP	fresh_instance () const override
core::Real	compute (core::pose::Pose const &pose) const
virtual	~BindingStrainFilter ()
void	parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &, protocols::filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &) override
core::Size	jump () const
void	jump (core::Size const j)
protocols::moves::MoverOP	relax_mover () const
void	relax_mover (protocols::moves::MoverOP const mover)
core::scoring::ScoreFunctionOP	scorefxn () const
void	scorefxn (core::scoring::ScoreFunctionOP scorefxn)
core::pack::task::TaskFactoryOP	task_factory () const
void	task_factory (core::pack::task::TaskFactoryOP task)
core::Real	threshold () const
void	threshold (core::Real const t)
std::string	name () const override
Public Member Functions inherited from protocols::filters::Filter
	Filter ()
	Filter (std::string)
	Filter (Filter const &)
	~Filter () override
virtual std::string	get_type () const
std::string	get_user_defined_name () const
void	set_user_defined_name (std::string const &name)
virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
virtual core::Real	score (core::pose::Pose &pose)

Static Public Member Functions
static std::string	class_name ()
static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)

Private Types
typedef protocols::filters::Filter	parent

Private Member Functions
void	unbind (core::pose::Pose &) const

Private Attributes
core::pack::task::TaskFactoryOP	task_factory_
core::scoring::ScoreFunctionOP	scorefxn_
protocols::moves::MoverOP	relax_mover_
core::Size	jump_
core::Real	threshold_

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Member Typedef Documentation

typedef protocols::filters::Filter protocols::protein_interface_design::filters::BindingStrainFilter::parent

private

Constructor & Destructor Documentation

protocols::protein_interface_design::filters::BindingStrainFilter::BindingStrainFilter

(

)

default ctor

Referenced by clone(), and fresh_instance().

protocols::protein_interface_design::filters::BindingStrainFilter::~BindingStrainFilter ( )

virtual

Member Function Documentation

bool protocols::protein_interface_design::filters::BindingStrainFilter::apply ( core::pose::Pose const &  pose ) const

overridevirtual

Constructor with a single target residue.

Implements protocols::filters::Filter.

References compute(), and threshold().

std::string protocols::protein_interface_design::filters::BindingStrainFilter::class_name ( )

static

Referenced by protocols::protein_interface_design::filters::BindingStrainFilterCreator::keyname(), name(), and provide_xml_schema().

protocols::filters::FilterOP protocols::protein_interface_design::filters::BindingStrainFilter::clone ( ) const

overridevirtual

Implements protocols::filters::Filter.

References BindingStrainFilter().

core::Real protocols::protein_interface_design::filters::BindingStrainFilter::compute

(

core::pose::Pose const &

pose

)

const

References protocols::simple_filters::ScoreTypeFilter::compute(), core::pose::symmetry::is_symmetric(), scorefxn(), task_factory(), core::scoring::total_score, and unbind().

Referenced by apply(), report(), and report_sm().

protocols::filters::FilterOP protocols::protein_interface_design::filters::BindingStrainFilter::fresh_instance ( ) const

overridevirtual

Implements protocols::filters::Filter.

References BindingStrainFilter().

core::Size protocols::protein_interface_design::filters::BindingStrainFilter::jump

(

)

const

References jump_.

Referenced by parse_my_tag(), and unbind().

void protocols::protein_interface_design::filters::BindingStrainFilter::jump

(

core::Size const

j

)

References jump_.

std::string protocols::protein_interface_design::filters::BindingStrainFilter::name ( ) const

overridevirtual

Reimplemented from protocols::filters::Filter.

References class_name().

void protocols::protein_interface_design::filters::BindingStrainFilter::parse_my_tag ( utility::tag::TagCOP  tag, basic::datacache::DataMap &  data, protocols::filters::Filters_map const &  , protocols::moves::Movers_map const &  movers, core::pose::Pose const &    )

overridevirtual

Reimplemented from protocols::filters::Filter.

References jump(), protocols::rosetta_scripts::parse_mover(), protocols::rosetta_scripts::parse_score_function(), protocols::rosetta_scripts::parse_task_operations(), relax_mover(), scorefxn(), task_factory(), threshold(), and protocols::protein_interface_design::filters::TR().

void protocols::protein_interface_design::filters::BindingStrainFilter::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd )

static

References protocols::rosetta_scripts::attributes_for_parse_score_function(), protocols::rosetta_scripts::attributes_for_parse_task_operations(), class_name(), and protocols::filters::xsd_type_definition_w_attributes().

Referenced by protocols::protein_interface_design::filters::BindingStrainFilterCreator::provide_xml_schema().

protocols::moves::MoverOP protocols::protein_interface_design::filters::BindingStrainFilter::relax_mover

(

)

const

References relax_mover_.

Referenced by parse_my_tag().

void protocols::protein_interface_design::filters::BindingStrainFilter::relax_mover

(

protocols::moves::MoverOP const

mover

)

References relax_mover_.

void protocols::protein_interface_design::filters::BindingStrainFilter::report ( std::ostream &  out, core::pose::Pose const &  pose  ) const

overridevirtual

Reimplemented from protocols::filters::Filter.

References compute().

core::Real protocols::protein_interface_design::filters::BindingStrainFilter::report_sm ( core::pose::Pose const &  ) const

overridevirtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

References compute().

core::scoring::ScoreFunctionOP protocols::protein_interface_design::filters::BindingStrainFilter::scorefxn

(

)

const

References scorefxn_.

Referenced by compute(), parse_my_tag(), and scorefxn().

void protocols::protein_interface_design::filters::BindingStrainFilter::scorefxn

(

core::scoring::ScoreFunctionOP

scorefxn

)

References scorefxn(), and scorefxn_.

core::pack::task::TaskFactoryOP protocols::protein_interface_design::filters::BindingStrainFilter::task_factory

(

)

const

References task_factory_.

Referenced by compute(), and parse_my_tag().

void protocols::protein_interface_design::filters::BindingStrainFilter::task_factory

(

core::pack::task::TaskFactoryOP

task

)

References task_factory_.

core::Real protocols::protein_interface_design::filters::BindingStrainFilter::threshold

(

)

const

References threshold_.

Referenced by apply(), and parse_my_tag().

void protocols::protein_interface_design::filters::BindingStrainFilter::threshold

(

core::Real const

t

)

References protocols::hybridization::t, and threshold_.

void protocols::protein_interface_design::filters::BindingStrainFilter::unbind ( core::pose::Pose &  pose ) const

private

References protocols::rigid::RigidBodyTransMover::apply(), jump(), and protocols::rigid::RigidBodyTransMover::step_size().

Referenced by compute().

Member Data Documentation

core::Size protocols::protein_interface_design::filters::BindingStrainFilter::jump_

private

Referenced by jump().

protocols::moves::MoverOP protocols::protein_interface_design::filters::BindingStrainFilter::relax_mover_

private

Referenced by relax_mover().

core::scoring::ScoreFunctionOP protocols::protein_interface_design::filters::BindingStrainFilter::scorefxn_

private

Referenced by scorefxn().

core::pack::task::TaskFactoryOP protocols::protein_interface_design::filters::BindingStrainFilter::task_factory_

private

Referenced by task_factory().

core::Real protocols::protein_interface_design::filters::BindingStrainFilter::threshold_

private

Referenced by threshold().

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The documentation for this class was generated from the following files:

• src/protocols/protein_interface_design/filters/BindingStrainFilter.hh
• src/protocols/protein_interface_design/filters/BindingStrainFilter.cc