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O Conchuir S, Barlow KA, Pache RA, Ollikainen N, Kundert K, O'Meara MJ, Smith CA, Kortemme T (2015)
A Web Resource for Standardized Benchmark Datasets, Metrics, and Rosetta Protocols for Macromolecular Modeling and Design.
PLoS One 10:e0130433 -
Ovchinnikov S, Kinch L, Park H, Liao Y, Pei J, Kim DE, Kamisetty H, Grishin NV, Baker D (2015)
Large scale determination of previously unsolved protein structures using evolutionary information.
Elife 4: -
Alford RF, Koehler Leman J, Weitzner BD, Duran AM, Tilley DC, Elazar A, Gray JJ (2015)
An Integrated Framework Advancing Membrane Protein Modeling and Design.
PLoS Comput Biol 11:e1004398 -
O'Meara MJ, Leaver-Fay A, Tyka M, Stein A, Houlihan K, DiMaio F, Bradley P, Kortemme T, Baker D, Snoeyink J, Kuhlman B (2015)
A Combined Covalent-Electrostatic Model of Hydrogen Bonding Improves Structure Prediction with Rosetta.
J Chem Theory Comput 11:609-622 -
Cheng CY, Chou FC, Das R (2015)
Modeling complex RNA tertiary folds with rosetta.
Methods Enzymol 553:35-64 -
DiMaio F, Song Y, Li X, Brunner MJ, Xu C, Conticello V, Egelman E, Marlovits TC, Cheng Y, Baker D (2015)
Atomic-accuracy models from 4.5-Å cryo-electron microscopy data with density-guided iterative local refinement.
Nat Methods : -
Johnson DK, Karanicolas J (2015)
Selectivity by small-molecule inhibitors of protein interactions can be driven by protein surface fluctuations.
PLoS Comput Biol 11:e1004081 -
Liu X, Wang X, Yang X, Liu S, Jiang L, Qu Y, Hu L, Ouyang Q, Tang C (2015)
Reliable cell cycle commitment in budding yeast is ensured by signal integration.
Elife 4: -
Guntas G, Hallett RA, Zimmerman SP, Williams T, Yumerefendi H, Bear JE, Kuhlman B (2015)
Engineering an improved light-induced dimer (iLID) for controlling the localization and activity of signaling proteins.
Proc Natl Acad Sci U S A 112:112-7 -
Parmeggiani F, Huang PS, Vorobiev S, Xiao R, Park K, Caprari S, Su M, Seetharaman J, Mao L, Janjua H, Montelione GT, Hunt J, Baker D (2015)
A general computational approach for repeat protein design.
J Mol Biol 427:563-75