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Pubs
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Khar KR, Goldschmidt L, Karanicolas J (2013)
Fast docking on graphics processing units via Ray-Casting.
PLoS One 8:e70661 -
Adolf-Bryfogle J, Dunbrack RL Jr (2013)
The PyRosetta Toolkit: a graphical user interface for the Rosetta software suite.
PLoS One 8:e66856 -
Drew K, Renfrew PD, Craven TW, Butterfoss GL, Chou FC, Lyskov S, Bullock BN, Watkins A, Labonte JW, Pacella M, Kilambi KP, Leaver-Fay A, Kuhlman B, Gray JJ, Bradley P, Kirshenbaum K, Arora PS, Das R, Bonneau R (2013)
Adding diverse noncanonical backbones to rosetta: enabling peptidomimetic design.
PLoS One 8:e67051 -
Wulff H, Yarov-Yarovoy V (2013)
Channels: Sticking to nooks and crannies.
Nat Chem Biol 9:473-4 -
Der BS, Kluwe C, Miklos AE, Jacak R, Lyskov S, Gray JJ, Georgiou G, Ellington AD, Kuhlman B (2013)
Alternative computational protocols for supercharging protein surfaces for reversible unfolding and retention of stability.
PLoS One 8:e64363 -
Lyskov S, Chou FC, Conchuir SO, Der BS, Drew K, Kuroda D, Xu J, Weitzner BD, Renfrew PD, Sripakdeevong P, Borgo B, Havranek JJ, Kuhlman B, Kortemme T, Bonneau R, Gray JJ, Das R (2013)
Serverification of molecular modeling applications: the Rosetta Online Server that Includes Everyone (ROSIE).
PLoS One 8:e63906 -
Stein A, Kortemme T (2013)
Improvements to robotics-inspired conformational sampling in rosetta.
PLoS One 8:e63090 -
Thomas JC, O'Hara JM, Hu L, Gao FP, Joshi SB, Volkin DB, Brey RN, Fang J, Karanicolas J, Mantis NJ, Middaugh CR (2013)
Effect of single-point mutations on the stability and immunogenicity of a recombinant ricin A chain subunit vaccine antigen.
Hum Vaccin Immunother 9:744-52 -
Johnson DK, Karanicolas J (2013)
Druggable protein interaction sites are more predisposed to surface pocket formation than the rest of the protein surface.
PLoS Comput Biol 9:e1002951 -
Der BS, Jha RK, Lewis SM, Thompson PM, Guntas G, Kuhlman B (2013)
Combined computational design of a zinc-binding site and a protein-protein interaction: one open zinc coordination site was not a robust hotspot for de novo ubiquitin binding.
Proteins 81:1245-55