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Boulanger MJ, Bankovich AJ, Kortemme T, Baker D, Garcia KC (2003)
Convergent mechanisms for recognition of divergent cytokines by the shared signaling receptor gp130.
Mol Cell 12:577-89
Wedemeyer WJ, Baker D (2003)
Efficient minimization of angle-dependent potentials for polypeptides in internal coordinates.
Dantas G, Kuhlman B, Callender D, Wong M, Baker D (2003)
A large scale test of computational protein design: folding and stability of nine completely redesigned globular proteins.
J Mol Biol 332:449-60
Tsai J, Bonneau R, Morozov AV, Kuhlman B, Rohl CA, Baker D (2003)
An improved protein decoy set for testing energy functions for protein structure prediction.
Gray JJ, Moughon S, Wang C, Schueler-Furman O, Kuhlman B, Rohl CA, Baker D (2003)
Protein-protein docking with simultaneous optimization of rigid-body displacement and side-chain conformations.
J Mol Biol 331:281-99
Schueler-Furman O, Baker D (2003)
Conserved residue clustering and protein structure prediction.
McFarland BJ, Kortemme T, Yu SF, Baker D, Strong RK (2003)
Symmetry recognizing asymmetry: analysis of the interactions between the C-type lectin-like immunoreceptor NKG2D and MHC class I-like ligands.
Kortemme T, Morozov AV, Baker D (2003)
An orientation-dependent hydrogen bonding potential improves prediction of specificity and structure for proteins and protein-protein complexes.
J Mol Biol 326:1239-59
Malmström L, Malmström J, Marko-Varga G, Westergren-Thorsson G (2002)
Proteomic 2DE database for spot selection, automated annotation, and data analysis.
J Proteome Res 1:135-8
Nauli S, Kuhlman B, Le Trong I, Stenkamp RE, Teller D, Baker D (2002)
Crystal structures and increased stabilization of the protein G variants with switched folding pathways NuG1 and NuG2.
Protein Sci 11:2924-31