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Bonneau R, Tsai J, Ruczinski I, Baker D (2001)
Functional inferences from blind ab initio protein structure predictions.
J Struct Biol 134:186-90
Kuhlman B, O'Neill JW, Kim DE, Zhang KY, Baker D (2001)
Conversion of monomeric protein L to an obligate dimer by computational protein design.
Proc Natl Acad Sci U S A 98:10687-91
Nauli S, Kuhlman B, Baker D (2001)
Computer-based redesign of a protein folding pathway.
Nat Struct Biol 8:602-5
Bonneau R, Baker D (2001)
Ab initio protein structure prediction: progress and prospects.
Annu Rev Biophys Biomol Struct 30:173-89
Bonneau R, Strauss CE, Baker D (2001)
Improving the performance of Rosetta using multiple sequence alignment information and global measures of hydrophobic core formation.
Bowers PM, Strauss CE, Baker D (2000)
De novo protein structure determination using sparse NMR data.
J Biomol NMR 18:311-8
Kuhlman B, Baker D (2000)
Native protein sequences are close to optimal for their structures.
Proc Natl Acad Sci U S A 97:10383-8
McCallister EL, Alm E, Baker D (2000)
Critical role of beta-hairpin formation in protein G folding.
Nat Struct Biol 7:669-73
Thayer EC, Bystroff C, Baker D (2000)
Detection of protein coding sequences using a mixture model for local protein amino acid sequence.
J Comput Biol 7:317-27
Yi Q, Scalley-Kim ML, Alm EJ, Baker D (2000)
NMR characterization of residual structure in the denatured state of protein L.
J Mol Biol 299:1341-51