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Sammond DW, Bosch DE, Butterfoss GL, Purbeck C, Machius M, Siderovski DP, Kuhlman B (2011)
Computational design of the sequence and structure of a protein-binding peptide.
J Am Chem Soc 133:4190-2 -
Morin A, Kaufmann KW, Fortenberry C, Harp JM, Mizoue LS, Meiler J (2011)
Computational design of an endo-1,4-beta-xylanase ligand binding site.
Protein Eng Des Sel 24:503-16 -
Yanover C, Bradley P (2011)
Extensive protein and DNA backbone sampling improves structure-based specificity prediction for C2H2 zinc fingers.
Nucleic Acids Res 39:4564-76 -
Morin A, Meiler J, Mizoue LS (2011)
Computational design of protein-ligand interfaces: potential in therapeutic development.
Trends Biotechnol 29:159-66 -
Ulge UY, Baker DA, Monnat RJ Jr (2011)
Comprehensive computational design of mCreI homing endonuclease cleavage specificity for genome engineering.
Nucleic Acids Res 39:4330-9 -
Kellogg EH, Leaver-Fay A, Baker D (2011)
Role of conformational sampling in computing mutation-induced changes in protein structure and stability.
Proteins 79:830-8 -
Leaver-Fay A, Tyka M, Lewis SM, Lange OF, Thompson J, Jacak R, Kaufman K, Renfrew PD, Smith CA, Sheffler W, Davis IW, Cooper S, Treuille A, Mandell DJ, Richter F, Ban YE, Fleishman SJ, Corn JE, Kim DE, Lyskov S, Berrondo M, Mentzer S, Popović Z, Havranek JJ, Karanicolas J, Das R, Meiler J, Kortemme T, Gray JJ, Kuhlman B, Baker D, Bradley P (2011)
ROSETTA3: an object-oriented software suite for the simulation and design of macromolecules.
Methods Enzymol 487:545-74 -
Moon TS, Clarke EJ, Groban ES, Tamsir A, Clark RM, Eames M, Kortemme T, Voigt CA (2011)
Construction of a genetic multiplexer to toggle between chemosensory pathways in Escherichia coli.
J Mol Biol 406:215-27 -
Bosch DE, Kimple AJ, Sammond DW, Muller RE, Miley MJ, Machius M, Kuhlman B, Willard FS, Siderovski DP (2011)
Structural determinants of affinity enhancement between GoLoco motifs and G-protein alpha subunit mutants.
J Biol Chem 286:3351-8 -
Bocik WE, Sircar A, Gray JJ, Tolman JR (2011)
Mechanism of polyubiquitin chain recognition by the human ubiquitin conjugating enzyme Ube2g2.
J Biol Chem 286:3981-91