basic::options::OptionKeys::cluster Namespace Reference

Namespaces
	energy_based_clustering

Variables
BooleanOptionKey const	cluster
BooleanOptionKey const	lite
RealOptionKey const	input_score_filter
RealOptionKey const	output_score_filter
IntegerVectorOptionKey const	exclude_res
RealOptionKey const	thinout_factor
RealOptionKey const	radius
IntegerOptionKey const	limit_cluster_size
RealOptionKey const	limit_cluster_size_percent
RealOptionKey const	random_limit_cluster_size_percent
IntegerOptionKey const	limit_clusters
IntegerOptionKey const	limit_total_structures
IntegerOptionKey const	max_total_cluster
BooleanOptionKey const	gdtmm
BooleanOptionKey const	skip_align
IntegerOptionKey const	max_rms_matrix
BooleanOptionKey const	rna_P
BooleanOptionKey const	sort_groups_by_energy
BooleanOptionKey const	sort_groups_by_size
BooleanOptionKey const	remove_singletons
BooleanOptionKey const	export_only_low
BooleanOptionKey const	remove_highest_energy_member
BooleanOptionKey const	idealize_final_structures
IntegerOptionKey const	limit_dist_matrix
BooleanOptionKey const	make_ensemble_cst
BooleanOptionKey const	hotspot_hash
BooleanOptionKey const	loops
RealOptionKey const	population_weight
StringOptionKey const	template_scores
IntegerOptionKey const	K_level
RealVectorOptionKey const	K_radius
IntegerVectorOptionKey const	K_n_cluster
StringVectorOptionKey const	K_style
IntegerOptionKey const	K_n_sub
IntegerOptionKey const	K_deque_size
IntegerOptionKey const	K_deque_level
BooleanOptionKey const	K_redundant
BooleanOptionKey const	K_not_fit_xyz
BooleanOptionKey const	K_save_headers
RealOptionKey const	score_diff_cut
BooleanOptionKey const	auto_tune
BooleanOptionKey const	write_centers

Variable Documentation

BooleanOptionKey const basic::options::OptionKeys::cluster::auto_tune

Referenced by add_rosetta_options_6(), cluster_outfile_test(), cluster_test(), and main().

BooleanOptionKey const basic::options::OptionKeys::cluster::cluster

Referenced by add_rosetta_options_6(), cluster_test(), main(), register_options(), and run().

IntegerVectorOptionKey const basic::options::OptionKeys::cluster::exclude_res

Referenced by add_rosetta_options_6(), create_base_pair_step_database_test(), create_bp_jump_database_test(), create_rna_vall_torsions_test(), and main().

BooleanOptionKey const basic::options::OptionKeys::cluster::export_only_low

Referenced by add_rosetta_options_6(), and main().

BooleanOptionKey const basic::options::OptionKeys::cluster::gdtmm

Referenced by add_rosetta_options_6().

BooleanOptionKey const basic::options::OptionKeys::cluster::hotspot_hash

Referenced by add_rosetta_options_6().

BooleanOptionKey const basic::options::OptionKeys::cluster::idealize_final_structures

Referenced by add_rosetta_options_6().

RealOptionKey const basic::options::OptionKeys::cluster::input_score_filter

Referenced by add_rosetta_options_6(), and main().

IntegerOptionKey const basic::options::OptionKeys::cluster::K_deque_level

Referenced by add_rosetta_options_6().

IntegerOptionKey const basic::options::OptionKeys::cluster::K_deque_size

Referenced by add_rosetta_options_6().

IntegerOptionKey const basic::options::OptionKeys::cluster::K_level

Referenced by add_rosetta_options_6().

IntegerVectorOptionKey const basic::options::OptionKeys::cluster::K_n_cluster

Referenced by add_rosetta_options_6().

IntegerOptionKey const basic::options::OptionKeys::cluster::K_n_sub

Referenced by add_rosetta_options_6().

BooleanOptionKey const basic::options::OptionKeys::cluster::K_not_fit_xyz

Referenced by add_rosetta_options_6().

RealVectorOptionKey const basic::options::OptionKeys::cluster::K_radius

Referenced by add_rosetta_options_6().

BooleanOptionKey const basic::options::OptionKeys::cluster::K_redundant

Referenced by add_rosetta_options_6().

BooleanOptionKey const basic::options::OptionKeys::cluster::K_save_headers

Referenced by add_rosetta_options_6().

StringVectorOptionKey const basic::options::OptionKeys::cluster::K_style

Referenced by add_rosetta_options_6().

IntegerOptionKey const basic::options::OptionKeys::cluster::limit_cluster_size

Referenced by add_rosetta_options_6(), and main().

RealOptionKey const basic::options::OptionKeys::cluster::limit_cluster_size_percent

Referenced by add_rosetta_options_6(), and main().

IntegerOptionKey const basic::options::OptionKeys::cluster::limit_clusters

Referenced by add_rosetta_options_6(), and main().

IntegerOptionKey const basic::options::OptionKeys::cluster::limit_dist_matrix

Referenced by add_rosetta_options_6(), and main().

IntegerOptionKey const basic::options::OptionKeys::cluster::limit_total_structures

Referenced by add_rosetta_options_6(), and main().

BooleanOptionKey const basic::options::OptionKeys::cluster::lite

Referenced by add_rosetta_options_6().

BooleanOptionKey const basic::options::OptionKeys::cluster::loops

Referenced by add_rosetta_options_6(), APDBCMover::apply(), CaToAllAtom::apply(), get_unaligned(), main(), read_input_weights(), run(), and DougsDockDesignMinimizeMagicMover::setup_pert_foldtree().

BooleanOptionKey const basic::options::OptionKeys::cluster::make_ensemble_cst

Referenced by add_rosetta_options_6(), and main().

IntegerOptionKey const basic::options::OptionKeys::cluster::max_rms_matrix

Referenced by add_rosetta_options_6(), and main().

IntegerOptionKey const basic::options::OptionKeys::cluster::max_total_cluster

Referenced by add_rosetta_options_6(), and main().

RealOptionKey const basic::options::OptionKeys::cluster::output_score_filter

Referenced by add_rosetta_options_6(), and main().

RealOptionKey const basic::options::OptionKeys::cluster::population_weight

Referenced by add_rosetta_options_6(), and main().

RealOptionKey const basic::options::OptionKeys::cluster::radius

Referenced by add_rosetta_options_6(), cluster_outfile_test(), cluster_test(), numeric::geometry::hashing::xyzStripeHash::init(), numeric::geometry::hashing::SixDOffsetTree::insert(), main(), basic::sampling::orientations::QuaternionGridManager::request_by_radius(), and numeric::geometry::hashing::SixDOffsetTree::sum_radius().

RealOptionKey const basic::options::OptionKeys::cluster::random_limit_cluster_size_percent

Referenced by add_rosetta_options_6(), and main().

BooleanOptionKey const basic::options::OptionKeys::cluster::remove_highest_energy_member

Referenced by add_rosetta_options_6(), and main().

BooleanOptionKey const basic::options::OptionKeys::cluster::remove_singletons

Referenced by add_rosetta_options_6(), and main().

BooleanOptionKey const basic::options::OptionKeys::cluster::rna_P

Referenced by add_rosetta_options_6().

RealOptionKey const basic::options::OptionKeys::cluster::score_diff_cut

Referenced by add_rosetta_options_6(), cluster_test(), main(), and swa_rna_cluster().

BooleanOptionKey const basic::options::OptionKeys::cluster::skip_align

Referenced by add_rosetta_options_6().

BooleanOptionKey const basic::options::OptionKeys::cluster::sort_groups_by_energy

Referenced by add_rosetta_options_6(), and main().

BooleanOptionKey const basic::options::OptionKeys::cluster::sort_groups_by_size

Referenced by add_rosetta_options_6().

StringOptionKey const basic::options::OptionKeys::cluster::template_scores

Referenced by add_rosetta_options_6().

RealOptionKey const basic::options::OptionKeys::cluster::thinout_factor

Referenced by add_rosetta_options_6(), and main().

BooleanOptionKey const basic::options::OptionKeys::cluster::write_centers

Referenced by add_rosetta_options_6().