Rosetta
2019.07
|
Variables | |
BooleanOptionKey const | energy_based_clustering |
BooleanOptionKey const | prerelax |
IntegerOptionKey const | relax_rounds |
StringOptionKey const | cluster_by |
BooleanOptionKey const | use_CB |
RealOptionKey const | cluster_radius |
IntegerVectorOptionKey const | residues_to_ignore |
IntegerVectorOptionKey const | chains_to_ignore |
IntegerOptionKey const | limit_structures_per_cluster |
IntegerOptionKey const | limit_clusters |
BooleanOptionKey const | cyclic |
IntegerOptionKey const | cyclic_symmetry |
BooleanOptionKey const | cyclic_symmetry_mirroring |
RealOptionKey const | cyclic_symmetry_threshold |
BooleanOptionKey const | cluster_cyclic_permutations |
IntegerOptionKey const | cyclic_permutation_offset |
BooleanOptionKey const | mutate_to_ala |
IntegerVectorOptionKey const | disulfide_positions |
BooleanOptionKey const | homooligomer_swap |
BooleanOptionKey const | silent_output |
FileVectorOptionKey const | cst_file |
StringVectorOptionKey const | extra_rms_atoms |
BooleanOptionKey const | rebuild_all_in_dihedral_mode |
IntegerVectorOptionKey const basic::options::OptionKeys::cluster::energy_based_clustering::chains_to_ignore |
Referenced by add_rosetta_options_6().
StringOptionKey const basic::options::OptionKeys::cluster::energy_based_clustering::cluster_by |
Referenced by add_rosetta_options_6().
BooleanOptionKey const basic::options::OptionKeys::cluster::energy_based_clustering::cluster_cyclic_permutations |
Referenced by add_rosetta_options_6().
RealOptionKey const basic::options::OptionKeys::cluster::energy_based_clustering::cluster_radius |
Referenced by add_rosetta_options_6(), cluster_outfile_test(), cluster_test(), main(), and make_fragments().
FileVectorOptionKey const basic::options::OptionKeys::cluster::energy_based_clustering::cst_file |
Referenced by add_rosetta_options_6(), get_stepwise_score_function(), main(), print_pep_csts(), rebuild_test(), run(), and RunPepSpec().
BooleanOptionKey const basic::options::OptionKeys::cluster::energy_based_clustering::cyclic |
Referenced by add_rosetta_options_6(), PeptoidDesignMover::apply(), and main().
IntegerOptionKey const basic::options::OptionKeys::cluster::energy_based_clustering::cyclic_permutation_offset |
Referenced by add_rosetta_options_6().
IntegerOptionKey const basic::options::OptionKeys::cluster::energy_based_clustering::cyclic_symmetry |
Referenced by add_rosetta_options_6().
BooleanOptionKey const basic::options::OptionKeys::cluster::energy_based_clustering::cyclic_symmetry_mirroring |
Referenced by add_rosetta_options_6().
RealOptionKey const basic::options::OptionKeys::cluster::energy_based_clustering::cyclic_symmetry_threshold |
Referenced by add_rosetta_options_6().
IntegerVectorOptionKey const basic::options::OptionKeys::cluster::energy_based_clustering::disulfide_positions |
Referenced by add_rosetta_options_6().
BooleanOptionKey const basic::options::OptionKeys::cluster::energy_based_clustering::energy_based_clustering |
Referenced by add_rosetta_options_6(), and main().
StringVectorOptionKey const basic::options::OptionKeys::cluster::energy_based_clustering::extra_rms_atoms |
Referenced by add_rosetta_options_6().
BooleanOptionKey const basic::options::OptionKeys::cluster::energy_based_clustering::homooligomer_swap |
Referenced by add_rosetta_options_6().
IntegerOptionKey const basic::options::OptionKeys::cluster::energy_based_clustering::limit_clusters |
Referenced by add_rosetta_options_6().
IntegerOptionKey const basic::options::OptionKeys::cluster::energy_based_clustering::limit_structures_per_cluster |
Referenced by add_rosetta_options_6().
BooleanOptionKey const basic::options::OptionKeys::cluster::energy_based_clustering::mutate_to_ala |
Referenced by add_rosetta_options_6().
BooleanOptionKey const basic::options::OptionKeys::cluster::energy_based_clustering::prerelax |
Referenced by add_rosetta_options_6().
BooleanOptionKey const basic::options::OptionKeys::cluster::energy_based_clustering::rebuild_all_in_dihedral_mode |
Referenced by add_rosetta_options_6().
IntegerOptionKey const basic::options::OptionKeys::cluster::energy_based_clustering::relax_rounds |
Referenced by add_rosetta_options_6().
IntegerVectorOptionKey const basic::options::OptionKeys::cluster::energy_based_clustering::residues_to_ignore |
Referenced by add_rosetta_options_6().
BooleanOptionKey const basic::options::OptionKeys::cluster::energy_based_clustering::silent_output |
Referenced by add_rosetta_options_6().
BooleanOptionKey const basic::options::OptionKeys::cluster::energy_based_clustering::use_CB |
Referenced by add_rosetta_options_6().