make_symmdef_file_denovo Namespace Reference

Variables
int	length = -1
tuple	pos = argv.index('-symm_type')
list	symm_type_name = argv[pos+1]
list	nsub = argv[pos+1]
int	subsystem_size = 0
string	slide_type = ""
string	slide_criteria_type = ""
string	slide_order = ""
string	slide_criteria_val = ""
tuple	subunits = int(nsub)
list	interfaces = []
int	num_interfaces = 0
string	E_string = "E = "
int	interface_num = 0
int	jump_num = sub+1
int	vrt_start_num = sub+1
int	vrt_stop_num = sub+2
string	jump_start = 'VRT'
string	jump_stop = 'VRT'
tuple	rotation_z = float(2*360.000/(float(subunits)))
int	z_jump = subunits/2
tuple	z_random_rotation = float(360.000/float(subunits))
tuple	rot_z1 = float(360.000/float(subunits))
float	rot_z2 = 360.000
float	rotation_z2 = 360.000

Variable Documentation

string make_symmdef_file_denovo.E_string = "E = "

int make_symmdef_file_denovo.interface_num = 0

list make_symmdef_file_denovo.interfaces = []

int make_symmdef_file_denovo.jump_num = sub+1

string make_symmdef_file_denovo.jump_start = 'VRT'

string make_symmdef_file_denovo.jump_stop = 'VRT'

int make_symmdef_file_denovo.length = -1

Referenced by add_rosetta_options_9(), close_loops(), utility.encode6bit(), find_neighbors_directional(), find_residues_around_mutation(), utility::tag.handle_xml_error(), utility::tag.handle_xml_warning(), ExposedStrandMover.move_superimpose(), fmt::BasicWriter< Char >.operator<<(), PDB_IOBenchmark.setUp(), setup_ca_constraints(), slice_ellipsoid_envelope(), and slice_sample_res_and_surrounding().

list make_symmdef_file_denovo.nsub = argv[pos+1]

Referenced by numeric::UniformRotationSampler.generateIcosahedralSamples().

int make_symmdef_file_denovo.num_interfaces = 0

tuple make_symmdef_file_denovo.pos = argv.index('-symm_type')

Referenced by add_protocols(), apps::pilot::frankdt.compare_segment_to_motif(), utility.contains(), create_base_pair_step_database_test(), numeric::interpolation::spline::PolycubicSpline< N >.dFdxi(), numeric::interpolation::spline::PolycubicSpline< N >.F(), FragID.FragID(), numeric::VoxelGrid< typename >.GetNeighbors1D(), numeric::VoxelGrid< typename >.GetNeighborsMultiDimensional(), numeric::VoxelGrid< typename >.HasNeighbors1D(), numeric::VoxelGrid< typename >.HasNeighborsMultiDimensional(), identify_targeted_positions(), main(), numeric::kdtree::KDPointList.operator[](), output_superimposed_pdb(), ObjexxFCL::Fstring.overlay(), processRegions(), numeric::VoxelGrid< typename >.RemoveObject(), utility.replace_in(), rna_design_test(), rna_fullatom_minimize_test(), run(), DockFragmentsMover.run(), FragmentAssemblyMover.run(), sequence_tolerance_main(), numeric::VoxelGrid< typename >.SetupGrid(), ss_ds_ts_assign_test(), and svm_load_model().

tuple make_symmdef_file_denovo.rot_z1 = float(360.000/float(subunits))

float make_symmdef_file_denovo.rot_z2 = 360.000

tuple make_symmdef_file_denovo.rotation_z = float(2*360.000/(float(subunits)))

float make_symmdef_file_denovo.rotation_z2 = 360.000

list make_symmdef_file_denovo.slide_criteria_type = ""

list make_symmdef_file_denovo.slide_criteria_val = ""

string make_symmdef_file_denovo.slide_order = ""

list make_symmdef_file_denovo.slide_type = ""

int make_symmdef_file_denovo.subsystem_size = 0

tuple make_symmdef_file_denovo.subunits = int(nsub)

list make_symmdef_file_denovo.symm_type_name = argv[pos+1]

int make_symmdef_file_denovo.vrt_start_num = sub+1

int make_symmdef_file_denovo.vrt_stop_num = sub+2

int make_symmdef_file_denovo.z_jump = subunits/2

tuple make_symmdef_file_denovo.z_random_rotation = float(360.000/float(subunits))