Class for keeping track of the closest N KDPoint objects by distance. More...

#include <KDPointList.hh>

Inheritance diagram for numeric::kdtree::KDPointList:

Public Types
typedef utility::vector1 < KDPointOP >::iterator	iterator

typedef utility::vector1 < KDPointOP >::const_iterator	const_iterator

Public Types inherited from utility::pointer::ReferenceCount
typedef platform::Size	Size

typedef platform::Size	size_type

Public Member Functions
	~KDPointList () override
	Automatically generated virtual destructor for class deriving directly from ReferenceCount. More...

const_iterator	begin () const

const_iterator	end () const

iterator	begin ()

iterator	end ()

	KDPointList (numeric::Size const n_to_keep)

void	insert (KDPointOP pt)

numeric::Real	worst_distance () const

KDPointOP	operator[] (numeric::Size const pos) const

numeric::Size	size () const

numeric::Size	max_values () const

numeric::Real	distance_cutoff () const

void	distance_cutoff (numeric::Real const cutoff)

utility::vector1< KDPointOP >	sorted_values ()

void	merge (KDPointList const &other)
	merge another KDPointList with this KDPointList. This calls insert which is a little slow, and is a candidate for optimization if the insert() method shows up in profiling. More...

void	show (std::ostream &out) const

Public Member Functions inherited from utility::pointer::ReferenceCount
	ReferenceCount ()
	Default constructor. More...

virtual	~ReferenceCount ()

Private Member Functions
void	update_heap_ ()

void	update_size_ ()

Private Attributes
numeric::Size	max_vals_

numeric::Real	distance_cutoff_

utility::vector1< KDPointOP >	container_

Detailed Description

Class for keeping track of the closest N KDPoint objects by distance.

Member Typedef Documentation

typedef utility::vector1< KDPointOP >::const_iterator numeric::kdtree::KDPointList::const_iterator

typedef utility::vector1< KDPointOP >::iterator numeric::kdtree::KDPointList::iterator

Constructor & Destructor Documentation

numeric::kdtree::KDPointList::~KDPointList ( )

overridedefault

Automatically generated virtual destructor for class deriving directly from ReferenceCount.

Auto-generated virtual destructor

numeric::kdtree::KDPointList::KDPointList ( numeric::Size const n_to_keep )

Member Function Documentation

utility::vector1< KDPointOP >::const_iterator numeric::kdtree::KDPointList::begin ( ) const

References container_.

utility::vector1< KDPointOP >::iterator numeric::kdtree::KDPointList::begin ( )

References container_.

numeric::Real numeric::kdtree::KDPointList::distance_cutoff ( ) const

References distance_cutoff_.

Referenced by numeric::kdtree::nearest_neighbors(), and worst_distance().

void numeric::kdtree::KDPointList::distance_cutoff ( numeric::Real const cutoff )

References basic::options::OptionKeys::cp::cutoff, and distance_cutoff_.

utility::vector1< KDPointOP >::const_iterator numeric::kdtree::KDPointList::end ( ) const

References container_.

utility::vector1< KDPointOP >::iterator numeric::kdtree::KDPointList::end ( )

References container_.

void numeric::kdtree::KDPointList::insert ( KDPointOP pt )

References container_, update_heap_(), and update_size_().

Referenced by merge(), and numeric::kdtree::nearest_neighbors().

numeric::Size numeric::kdtree::KDPointList::max_values ( ) const

References max_vals_.

Referenced by numeric::kdtree::nearest_neighbors(), and worst_distance().

void numeric::kdtree::KDPointList::merge ( KDPointList const & other )

merge another KDPointList with this KDPointList. This calls insert which is a little slow, and is a candidate for optimization if the insert() method shows up in profiling.

References insert().

Referenced by numeric::kdtree::nearest_neighbors().

KDPointOP numeric::kdtree::KDPointList::operator[] ( numeric::Size const pos ) const

References container_, make_symmdef_file_denovo::pos, and size().

void numeric::kdtree::KDPointList::show ( std::ostream & out ) const

References container_, and size().

numeric::Size numeric::kdtree::KDPointList::size ( ) const

References container_.

Referenced by operator[](), and show().

utility::vector1< KDPointOP > numeric::kdtree::KDPointList::sorted_values ( )

References container_, and test.T040_Types::values.

void numeric::kdtree::KDPointList::update_heap_ ( )