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Rosetta
2020.11
|
Variables | |
tuple | start = pose_from_file("../test/data/workshops/1YY8.clean.pdb") |
tuple | test = Pose() |
tuple | pmm = PyMOLMover() |
float | kT = 1.0 |
int | n_moves = 1 |
tuple | movemap = MoveMap() |
tuple | small_mover = SmallMover(movemap, kT, n_moves) |
tuple | shear_mover = ShearMover(movemap, kT, n_moves) |
tuple | test2 = Pose() |
tuple | min_mover = MinMover() |
tuple | mm4060 = MoveMap() |
tuple | scorefxn = create_score_function("ref2015") |
tuple | mc = MonteCarlo(test, scorefxn, kT) |
tuple | trial_mover = TrialMover(small_mover, mc) |
tuple | seq_mover = protocols.moves.SequenceMover() |
tuple | trialmover = TrialMover(seq_mover, mc) |
tuple | repeat_mover = RepeatMover(trialmover, 2) |
tuple | relax = protocols.relax.ClassicRelax() |
float test.Workshop5test.kT = 1.0 |
Referenced by add_rosetta_options_12(), MPDomainAssembly.apply(), calculate_binding_energy(), and fit_helix_in_map().
Referenced by add_rosetta_options_10(), HbsDesignMover.apply(), PeptoidDesignMover.apply(), OopDesignMover.apply(), MPDomainAssembly.apply(), UBQ_GTPase_disulfide_Mover.apply(), UBQ_E2Mover.apply(), zinc1_homodimer_design.design_symmetric_homodimer_interface(), zinc2_homodimer_design.design_symmetric_homodimer_metal_interface(), and run_mc().
tuple test.Workshop5test.min_mover = MinMover() |
tuple test.Workshop5test.mm4060 = MoveMap() |
tuple test.Workshop5test.movemap = MoveMap() |
int test.Workshop5test.n_moves = 1 |
tuple test.Workshop5test.pmm = PyMOLMover() |
tuple test.Workshop5test.relax = protocols.relax.ClassicRelax() |
Referenced by add_rosetta_options_12(), add_rosetta_options_3(), add_rosetta_options_4(), add_rosetta_options_6(), helix_from_sequence(), main(), relax_with_restraints_on_constres(), FastRelaxPerformanceBenchmark.setup_for_mmstd(), FastRelaxPerformanceBenchmark.setup_for_sc12he(), FastRelaxPerformanceBenchmark.setup_for_sc12sp2(), FastRelaxPerformanceBenchmark.setup_for_score12(), and FastRelaxPerformanceBenchmark.setup_for_sp2hecart().
tuple test.Workshop5test.repeat_mover = RepeatMover(trialmover, 2) |
Referenced by main().
tuple test.Workshop5test.scorefxn = create_score_function("ref2015") |
tuple test.Workshop5test.seq_mover = protocols.moves.SequenceMover() |
Referenced by main().
Referenced by UBQ_GTPase_disulfide_Mover.apply(), UBQ_E2Mover.apply(), main(), and run_mc().
Referenced by UBQ_GTPase_disulfide_Mover.apply(), UBQ_E2Mover.apply(), main(), and run_mc().
tuple test.Workshop5test.start = pose_from_file("../test/data/workshops/1YY8.clean.pdb") |
Referenced by add_rosetta_options_6(), calc_scores(), correct_dunbrack(), delete_protein_from_pose(), delete_RNA_from_pose(), utility::graph::Node.find_edge(), utility::graph::DirectedNode.find_edge_from(), utility::graph::DirectedNode.find_edge_to(), fmt::BasicFormatter< CharType, ArgFormatter >.format(), SVC_Q.get_Q(), ONE_CLASS_Q.get_Q(), basic::gpu::Timer.GetTime(), numeric::IntervalSet< double >.IntervalSet(), numeric.linear_interpolate(), main(), apps::public1::scenarios::chemically_conjugated_docking.pack_extra_bodies(), fmt::BasicFormatter< CharType, ArgFormatter >.parse_arg_name(), Prepare(), basic.prof_stop_function_body(), numeric::IntervalSet< double >.push_back(), utility.quoted_split(), utility.replace_environment_variables(), basic::gpu::Timer.Reset(), numeric::IntervalSet< double >.set(), utility.split(), utility.split_by_newlines(), utility.split_to_list(), utility.split_to_set(), svm_cross_validation(), svm_group_classes(), svm_predict_values(), svm_train(), numeric::interpolation::spline::TricubicSpline.train(), numeric::interpolation::spline::PolycubicSpline< N >.train(), fmt::internal::FormatterBase.write(), fmt::BasicWriter< Char >.write_double(), and basic::DynamicProfileThis.~DynamicProfileThis().
tuple test.Workshop5test.test = Pose() |
Referenced by numeric.expand_xforms(), and numeric::geometry::hashing::SixDOffsetTree.init().
tuple test.Workshop5test.test2 = Pose() |
tuple test.Workshop5test.trial_mover = TrialMover(small_mover, mc) |
Referenced by main().