Rosetta
3.8
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A Mover that iterates through a vector of Movers, applying each one sequentially. More...
#include <MoverContainer.hh>
Public Member Functions | |
SequenceMover (bool ms=false) | |
Constructs a SequenceMover, optionally setting to use mover status. seqmover = SequenceMover() More... | |
SequenceMover (MoverOP mover1, MoverOP mover2) | |
Convenience constructor: initial sequence of 2 movers seqmover = SequenceMover( mover1 , mover2 ) More... | |
SequenceMover (MoverOP mover1, MoverOP mover2, MoverOP mover3) | |
Convenience constructor: initial sequence of 3 movers seqmover = SequenceMover( mover1 , mover2 , mover3 ) More... | |
SequenceMover (SequenceMover const &) | |
Copy constructor – performs a deep copy of all contained movers. Invoked by clone() More... | |
MoverOP | clone () const override |
deep copy of all contained movers. More... | |
MoverOP | fresh_instance () const override |
Generates a new Mover object freshly created with the default ctor. More... | |
void | use_mover_status (bool const flag) |
MoverStatus of the mover will be evaluated after each mover. More... | |
bool | use_mover_status () |
void | apply (core::pose::Pose &pose) override |
Applies a series of movers sequentially on a Pose. More... | |
std::string | get_name () const override |
Each derived class must specify its name. The class name. More... | |
Public Member Functions inherited from protocols::moves::MoverContainer | |
MoverContainer () | |
MoverContainer (MoverContainer const &source) | |
to be called by derived-class clone() methods; copy all data from the source MoverContainer More... | |
void | add_mover (MoverOP mover_in, core::Real weight_in=1.0) |
Adds a mover to the end of this container. More... | |
std::string | get_mover (core::Size index) const |
void | clear () |
void | set_input_pose (PoseCOP pose) override |
Sets the input Pose for both the container and the contained movers, for rmsd. More... | |
void | set_native_pose (PoseCOP pose) override |
setter for native poses contained for rms -— we should get rid of this method? it is widely used, but a bit unsafe More... | |
void | set_current_tag (std::string const &new_tag) override |
Size | nr_moves () |
Size | size () const |
MoverOP | front () |
utility::vector0< core::Real > const & | weights () const |
utility::vector0< MoverOP > const & | movers () const |
Public Member Functions inherited from protocols::moves::Mover | |
Mover () | |
~Mover () override | |
virtual MoverOP | create () |
MoverCOP | get_self_ptr () const |
MoverOP | get_self_ptr () |
MoverCAP | get_self_weak_ptr () const |
MoverAP | get_self_weak_ptr () |
Mover (std::string type_name) | |
sets the type for a mover; name_ has been removed (2010/05/14) More... | |
Mover (Mover const &other) | |
Mover & | operator= (Mover const &other) |
assignment operator More... | |
virtual core::Real | last_proposal_density_ratio () |
std::string const & | type () const |
void | set_type (std::string const &setting) |
std::string | get_current_tag () const |
A tag is a unique identifier used to identify structures produced by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor. More... | |
PoseCOP | get_input_pose () const |
PoseCOP | get_native_pose () const |
virtual void | test_move (Pose &pose) |
: Unit test support function. Apply one move to a given pose. Allows extra test specific functions to be called before applying More... | |
void | type (const std::string &type_in) |
virtual void | parse_my_tag (TagCOP tag, basic::datacache::DataMap &data, Filters_map const &filters, Movers_map const &movers, Pose const &pose) |
Called by MoverFactory when constructing new Movers. Takes care of the specific mover's parsing. More... | |
std::string | get_type () const |
MoverStatus | get_last_move_status () const |
end parser interface, start Job Distributor interface///////////// More... | |
void | reset_status () |
resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s. More... | |
virtual core::pose::PoseOP | get_additional_output () |
Mechanism by which a mover may return multiple output poses from a single input pose. More... | |
virtual void | clear_info () |
Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file. More... | |
virtual Strings & | info () |
non-const accessor More... | |
virtual Strings const & | info () const |
const accessor More... | |
virtual bool | reinitialize_for_each_job () const |
Inform the Job Distributor (August '08 vintage) whether this object needs to be freshly regenerated on each use. More... | |
virtual bool | reinitialize_for_new_input () const |
Inform the Job Distributor (August '08 vintage) whether this object needs to be regenerated when the input pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose). More... | |
void | set_current_job (protocols::jobdist::BasicJobCOP job) |
jobdist::BasicJobCOP | get_current_job () const |
virtual void | show (std::ostream &output=std::cout) const |
Outputs details about the Mover, including current settings. More... | |
Private Attributes | |
bool | use_mover_status_ |
use mover status ( default false ) More... | |
Additional Inherited Members | |
Public Types inherited from protocols::moves::Mover | |
typedef utility::tag::TagCOP | TagCOP |
typedef core::pose::Pose | Pose |
typedef core::pose::PoseCOP | PoseCOP |
typedef protocols::filters::Filters_map | Filters_map |
typedef std::list< std::string > | Strings |
Static Public Member Functions inherited from protocols::moves::Mover | |
static std::string | name () |
static void | register_options () |
Overload this static method if you access options within the mover. More... | |
Protected Member Functions inherited from protocols::moves::Mover | |
void | set_last_move_status (MoverStatus status) |
nonvirtual setter for MoverStatus last_status_. Protected means that only the mover itself will be able to change its own status. The job distributor (august 08 vintage) is aware of status set with this function and will do what the MoverStatus says. More... | |
Protected Attributes inherited from protocols::moves::MoverContainer | |
utility::vector0< core::Real > | weight_ |
relative weight when part of MoverContainer. More... | |
utility::vector0< MoverOP > | movers_ |
A Mover that iterates through a vector of Movers, applying each one sequentially.
Common Methods: SequenceMover.add_mover SequenceMover.apply
protocols::moves::SequenceMover::SequenceMover | ( | bool | ms = false | ) |
Constructs a SequenceMover, optionally setting to use mover status. seqmover = SequenceMover()
Constructs a SequenceMover seqmover = SequenceMover()
Referenced by clone(), and fresh_instance().
Convenience constructor: initial sequence of 2 movers seqmover = SequenceMover( mover1 , mover2 )
Mover mover1 /first mover to apply with SequenceMover.apply Mover mover2 /second mover to apply with SequenceMover.apply
References protocols::moves::MoverContainer::add_mover().
Convenience constructor: initial sequence of 3 movers seqmover = SequenceMover( mover1 , mover2 , mover3 )
Mover mover1 /first mover to apply with SequenceMover.apply Mover mover2 /second mover to apply with SequenceMover.apply Mover mover3 /third mover to apply with SequenceMover.apply
References protocols::moves::MoverContainer::add_mover().
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default |
Copy constructor – performs a deep copy of all contained movers. Invoked by clone()
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overridevirtual |
Applies a series of movers sequentially on a Pose.
example(s): seqmover.apply(pose) See also: MinMover RepeatMover SequenceMover TrialMover
Implements protocols::moves::MoverContainer.
References protocols::moves::FAIL_BAD_INPUT, protocols::moves::FAIL_DO_NOT_RETRY, protocols::moves::FAIL_RETRY, protocols::moves::MoverContainer::movers_, protocols::moves::MS_SUCCESS, protocols::moves::Mover::set_last_move_status(), protocols::moves::TR(), protocols::moves::Mover::type(), and use_mover_status_.
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overridevirtual |
deep copy of all contained movers.
Reimplemented from protocols::moves::Mover.
References SequenceMover().
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overridevirtual |
Generates a new Mover object freshly created with the default ctor.
fresh_instance is meant to return a new object of this class, created with the default constructor. This really should be a pure virtual in the base class, but adding pure virtuals to Mover would massively disrupt the code. This default implementation crashes at runtime instead of compiletime if you try to call it. If this code is causing you problems, your Mover needs to override this function. This is used by the August 08 job distributor.
Reimplemented from protocols::moves::Mover.
References SequenceMover().
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overridevirtual |
Each derived class must specify its name. The class name.
Implements protocols::moves::Mover.
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inline |
MoverStatus of the mover will be evaluated after each mover.
References use_mover_status_.
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inline |
References use_mover_status_.
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private |
use mover status ( default false )
Referenced by apply(), and use_mover_status().