#include <MPRangeRelaxMover.hh>

Inheritance diagram for protocols::relax::membrane::MPRangeRelaxMover:

Public Member Functions
	MPRangeRelaxMover ()
	Constructors ///. More...

	MPRangeRelaxMover (MPRangeRelaxMover const &src)
	Copy Constructor. More...

MPRangeRelaxMover &	operator= (MPRangeRelaxMover const &src)
	Assignment Operator. More...

virtual	~MPRangeRelaxMover ()
	Destructor. More...

virtual protocols::moves::MoverOP	clone () const
	Rosetta Scripts Methods ///. More...

virtual protocols::moves::MoverOP	fresh_instance () const
	Create a Fresh Instance of this Mover. More...

void	parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &, protocols::filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &)
	Pase Rosetta Scripts Options for this Mover. More...

virtual std::string	get_name () const
	Mover Methods ///. More...

virtual void	apply (Pose &pose)
	Do a RangeRelax of a membrane protein. More...

void	optimize_membrane (bool yesno)
	Optimize membrane. More...

Public Member Functions inherited from protocols::moves::Mover
	Mover ()

	~Mover () override

virtual MoverOP	create ()

MoverCOP	get_self_ptr () const

MoverOP	get_self_ptr ()

MoverCAP	get_self_weak_ptr () const

MoverAP	get_self_weak_ptr ()

	Mover (std::string type_name)
	sets the type for a mover; name_ has been removed (2010/05/14) More...

	Mover (Mover const &other)

Mover &	operator= (Mover const &other)
	assignment operator More...

virtual core::Real	last_proposal_density_ratio ()

std::string const &	type () const

void	set_type (std::string const &setting)

std::string	get_current_tag () const
	A tag is a unique identifier used to identify structures produced by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor. More...

virtual void	set_current_tag (std::string const &new_tag)

virtual void	set_input_pose (PoseCOP pose)
	setter for poses contained for rms More...

virtual void	set_native_pose (PoseCOP pose)
	setter for native poses contained for rms -— we should get rid of this method? it is widely used, but a bit unsafe More...

PoseCOP	get_input_pose () const

PoseCOP	get_native_pose () const

virtual void	test_move (Pose &pose)
	: Unit test support function. Apply one move to a given pose. Allows extra test specific functions to be called before applying More...

void	type (const std::string &type_in)

std::string	get_type () const

MoverStatus	get_last_move_status () const
	end parser interface, start Job Distributor interface///////////// More...

void	reset_status ()
	resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s. More...

virtual core::pose::PoseOP	get_additional_output ()
	Mechanism by which a mover may return multiple output poses from a single input pose. More...

virtual void	clear_info ()
	Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file. More...

virtual Strings &	info ()
	non-const accessor More...

virtual Strings const &	info () const
	const accessor More...

virtual bool	reinitialize_for_each_job () const
	Inform the Job Distributor (August '08 vintage) whether this object needs to be freshly regenerated on each use. More...

virtual bool	reinitialize_for_new_input () const
	Inform the Job Distributor (August '08 vintage) whether this object needs to be regenerated when the input pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose). More...

void	set_current_job (protocols::jobdist::BasicJobCOP job)

jobdist::BasicJobCOP	get_current_job () const

virtual void	show (std::ostream &output=std::cout) const
	Outputs details about the Mover, including current settings. More...

Private Member Functions
void	register_options ()
	Setup Methods ///. More...

void	set_defaults ()
	Set default values. More...

void	init_from_cmd ()
	Init from commandline. More...

Private Attributes
core::pose::PoseOP	native_
	Native. More...

core::scoring::ScoreFunctionOP	sfxn_
	Scorefxn. More...

core::Size	center_resnumber_
	Center residue number. More...

bool	set_tm_helical_
	Set helical secondary structure in TM region. More...

bool	optmem_
	optimize membrane? More...

Additional Inherited Members
Public Types inherited from protocols::moves::Mover
typedef utility::tag::TagCOP	TagCOP

typedef core::pose::Pose	Pose

typedef core::pose::PoseCOP	PoseCOP

typedef protocols::filters::Filters_map	Filters_map

typedef std::list< std::string >	Strings

Static Public Member Functions inherited from protocols::moves::Mover
static std::string	name ()

static void	register_options ()
	Overload this static method if you access options within the mover. More...

Protected Member Functions inherited from protocols::moves::Mover
void	set_last_move_status (MoverStatus status)
	nonvirtual setter for MoverStatus last_status_. Protected means that only the mover itself will be able to change its own status. The job distributor (august 08 vintage) is aware of status set with this function and will do what the MoverStatus says. More...

Constructor & Destructor Documentation

protocols::relax::membrane::MPRangeRelaxMover::MPRangeRelaxMover ( )

Constructors ///.

Default Constructor

References init_from_cmd(), register_options(), and set_defaults().

Referenced by clone(), fresh_instance(), and operator=().

protocols::relax::membrane::MPRangeRelaxMover::MPRangeRelaxMover ( MPRangeRelaxMover const & src )

Copy Constructor.

Create a deep copy of this mover

protocols::relax::membrane::MPRangeRelaxMover::~MPRangeRelaxMover ( )

virtual

Destructor.

Member Function Documentation

void protocols::relax::membrane::MPRangeRelaxMover::apply ( Pose & pose )

virtual

protocols::moves::MoverOP protocols::relax::membrane::MPRangeRelaxMover::clone ( ) const

virtual

Rosetta Scripts Methods ///.

Create a Clone of this mover

Reimplemented from protocols::moves::Mover.

References MPRangeRelaxMover().

protocols::moves::MoverOP protocols::relax::membrane::MPRangeRelaxMover::fresh_instance ( ) const

virtual

Create a Fresh Instance of this Mover.

Reimplemented from protocols::moves::Mover.

References MPRangeRelaxMover().

std::string protocols::relax::membrane::MPRangeRelaxMover::get_name ( ) const

virtual

Mover Methods ///.

Create a new copy of this mover.

Get the name of this Mover (MPRangeRelaxMover)

Mover Methods /// Get the name of this Mover (MPRangeRelaxMover)

Implements protocols::moves::Mover.

void protocols::relax::membrane::MPRangeRelaxMover::init_from_cmd ( )

private

Init from commandline.

Set default values.

References native_, core::import_pose::PDB_file, core::import_pose::pose_from_file(), and set_tm_helical_.

Referenced by MPRangeRelaxMover().

MPRangeRelaxMover & protocols::relax::membrane::MPRangeRelaxMover::operator= ( MPRangeRelaxMover const & src )

Assignment Operator.

References MPRangeRelaxMover().

void protocols::relax::membrane::MPRangeRelaxMover::optimize_membrane ( bool yesno )

Optimize membrane.

References optmem_.

void protocols::relax::membrane::MPRangeRelaxMover::parse_my_tag	(	utility::tag::TagCOP	tag,
		basic::datacache::DataMap &	,
		protocols::filters::Filters_map const &	,
		protocols::moves::Movers_map const &	,
		core::pose::Pose const &
	)