Unsolved

The problem hasn't been solved

error in installation

Submitted by yogihooda88 on Mon, 2010-10-18 11:58

hi everyone

I am trying to install rosetta on ubuntu maverick (10.10) and having troubles with it .... I tried to install with a lower version of gcc-4.2 (as suggested in the installation guide) instead of the gcc-4.4 (default for maverick) but it is giving the same error at one file:

/src/core/scoring/sasa.cc: 618 internal compiler error: Segmentation fault

is there anyone facing the same problem or know anything about how I go about solving it .. please let me know

cheers
yogesh

Post Situation:

Unsolved

Forums:

Rosetta 3 - Build/Install

Mac OSX installation

Submitted by levinthal on Mon, 2010-09-27 13:31

Hi everyone,

Here I'm sharing my frustration with using this module on Mac, with the hope of saving you some time, or finding a solution:

The library files (.so & dylib files) included in the package are ONLY compatible with the python 2.5 (and no other version) that is shipped with Mac OS.
This is a serious problem as many basic modules (e.g. numpy & scipy) are not compatible with this python and require standard version of python from python.org.
Here are some tricks that didn't work:

Post Situation:

Unsolved

Forums:

PyRosetta - Build/Install

Pyrosetta 32 bits with python 2.6??

Submitted by S on Wed, 2010-09-22 09:18

I have one problem, is that in my laptop I have a 32 bit systems bu5t with python 2.6. I prefer this version of python for several reasons, and my question is if exists any possibility of run pyrosetta under a 32bit system with python 2.6.

I know that the manual consider it impossible, but I want to know if somebody knows something new about this

Thank you

Post Situation:

Unsolved

Forums:

PyRosetta - Build/Install

Read more about Pyrosetta 32 bits with python 2.6??
1 comment
Log in or register to post comments

Trouble installing PyRosetta on RedHat Linux 5.2 system

Submitted by pemani on Wed, 2010-08-25 17:09

Hi,
Hopefully this is a sufficiently naive question that somebody can answer it easily. I have tried installing PyRosetta on a Linux 64-bit system, but cannot do so for one or the other of the following reasons:
1) if I try running Python 2.6.5 I get the following error:
"
$ source SetPyRosettaEnvironment.sh Missing }.
$ /phys/users/pemani/python2.6/bin/python ./ipython.py
/phys/users/pemani/PyRosettaFolder/IPython/Magic.py:38: DeprecationWarning: the sets module is deprecated
from sets import Set
Python 2.6.5 (r265:79063, Aug 19 2010, 17:00:16)

Post Situation:

Unsolved

Forums:

PyRosetta - Build/Install

Read more about Trouble installing PyRosetta on RedHat Linux 5.2 system
1 comment
Log in or register to post comments

Integration into Pre-installed Python in Windows

Submitted by kborowsk on Sun, 2010-06-13 21:57

Hi everyone,

Does anyone know of an easy method to set up PyRosetta (or a Python system path) to make the use of PyRosetta possible on a specific Python install in a Windows system?

When installing PyRosetta on Unix, it seems to enable the main Python for the system to use PyRosetta. However, the Windows version seems coupled to the IPython it comes with. I've tried setting up a modified path so that my other versions of Python can import PyRosetta, but I've had no luck (the import process cannot find the _rosetta_utility_000 files, or whatever they are called).

Post Situation:

Unsolved

Forums:

PyRosetta - Build/Install

Read more about Integration into Pre-installed Python in Windows
1 comment
Log in or register to post comments

GLIBCXX_3.4.9 Not found - libmini.so

Submitted by levinthal on Tue, 2010-03-09 16:56

The version of libstdc++ is older than the rosetta libmini.so needs. Is there a way to get the source code to recompile the rosetta software with my installed libraries or is there another way? I'm running Red Hat Enterprise Client 5.4

Dwayne

Linux 2.6.18-164.9.1.el5 #1 SMP Wed Dec 9 03:27:37 EST 2009 x86_64 x86_64 x86_64 GNU/Linux

Python 2.6.4 (r264:75706, Mar 8 2010, 21:01:17)
[GCC 4.1.2 20080704 (Red Hat 4.1.2-46)] on linux2
Type "help", "copyright", "credits" or "license" for more information.
>>> from rosetta import *
Traceback (most recent call last):

Post Situation:

Unsolved

Forums:

PyRosetta - Build/Install