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When posting build/install question please specify the following information about your system and PyRosetta version, this will allow us to answer your questions more accurate and faster:

- OS type,
- OS version
- OS arch (32 or 64bit)
for example: Ubuntu Linux 10.04 32Bit or Mac OS X 10.6

- Python version
- Python arch (32 or 64bit) if different from OS

- Version of PyRosetta including SVN revision number.

Thank you!

Post Situation: 

Linking Error compiling Rosetta with extras=mpi in M1 MacBook Air

Category: 
Compilation

I'm trying to build Rosetta-3.13 "rosetta.source.release-334" with the following command:

./scons.py mode=release bin extras=mpi

I have also updated the site.settings file to prepend the mpicxx and mpicc compilers for openmpi installed in my system.

I got the following error:

ld: warning: ignoring file /opt/programs/openmpi/4.1.4/lib/libmpi.dylib, building for macOS-x86_64 but attempting to link with file built for macOS-arm64

.... lots of lines...

Post Situation: 

Error with options -dunbrack_prob_buried_semi and -dunbrack_prob_nonburied_semi

Category: 
Scoring

Hi,

using a flag containing options "-dunbrack_prob_buried_semi 0.8" and "-dunbrack_prob_nonburied_semi 0.8", errors appear like:
...................................
File: /home/shanghai/RationalDesign/Rosetta3.9/rosetta_src_2018.09.60072_bundle/main/source/src/utility/options/OptionCollection.cc:1314
Option matching -dunbrack_prob_buried_semi not found in command line top-level context

...................................

 

the flags and log file were attached.

Please help, thanks

Post Situation: 

Grafting using antibody.mpi.linuxgccrelease , the modelled structure does not have constant region of the antibody.

Category: 
Structure prediction

Hello all,
Using this command to graft from a specific template
antibody.mpi.linuxgccrelease -antibody:blastp /home/rosetta/ncbi-blast-2.13.0+/bin/blastp -fasta antibody.fasta -antibody:h1_template  pdb_id
The modelled structure does not have constant portion of the antibody.

Post Situation: 

Access to GitHub Denied

Category: 
ROSIE

Hi,

I am contacting you as I cannot login in GitHub portal with my ROSIE account credentials to perform docking analysis. 

My credentials are:

Lucia93

University of Warwick

I also created an account on Rosetta Commons website, but neither those ones are accepted for the login.

Can someone help me with this please?

Best wishes,

Lucia

Post Situation: 

farfar2 failed

Category: 
Structure prediction

Hello

I am trying to model a modified 3D RNA structure using farfar2. 

Job 「№108206」has failed with the message: No output silent files were produced in the FARFAR2 step; please double-check your inputs!

I have checked the input sequence and dot bracket files (PDB file exceeds the maximum allowed size for upload). I don't know, how to solve it. Attaching the input flies. Could someone please help me sort the error.

Thank you

Post Situation: 

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