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READ THIS BEFORE YOU POST

Submitted by Sergey on Thu, 2011-02-03 09:58

When posting build/install question please specify the following information about your system and PyRosetta version, this will allow us to answer your questions more accurate and faster:

- OS type,
- OS version
- OS arch (32 or 64bit)
for example: Ubuntu Linux 10.04 32Bit or Mac OS X 10.6

- Python version
- Python arch (32 or 64bit) if different from OS

- Version of PyRosetta including SVN revision number.

Thank you!

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PyRosetta - Build/Install

clustering PDBs from docking

Submitted by jbujons on Wed, 2024-04-24 08:34
Category: 
Docking

Hi,

I performed a protein-protein docking within rosetta by using a single receptor structure and several conformations of the same ligand protein. Now I am trying to cluster the results (aprox 1000 structures) using the cluster application included in rosetta by running:

cluster.linuxgccrelease -in:file:l pdblist -in::file::fullatom

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Rosetta 3 - General

email verification not received

Submitted by 0rpheus on Fri, 2024-04-19 09:34
Category: 
ROSIE

I am an academic user and applied for a new account on ROSIE. There was no mention of restrictions on email address, e.g. that an academic email had to be used.

I input my preferred external gmail account, ethanwilltaylor@gmail.com, but have not received verification emails or error messages saying that address is invalid.

Can you clarify this or otherwise validate this email address?

Thanks for your help,

EWT

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ROSIE - General

Scripts and/or strategies for saturation mutagenesis simulations?

Submitted by drinker615 on Tue, 2024-04-16 18:43
Category: 
Scoring

Just wanted to confirm there is no semi-official script or protocol for DMS using Rosetta and ddg cartesian? 

Seems like an easy enough thing to script using existing methods and protocols....but ideally, I would like a strategy that avoided generating 19 WT models per-site, per-iteration (since just one set would suffice for all DDGs).

That would same me a lot of comput time. For a 500aa protein with 10 iterations per DDG estimate, that would save me from building (18x500x10=90,000  superfulous models.

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Rosetta 3 - General

Issues building for Phenix interface

Submitted by jmheumann on Tue, 2024-04-16 15:54
Category: 
Compilation

Hi,

I'm having trouble building 3.14 from the release 371 source on RHEL8 using gcc 8.5.0 following the instructions at https://phenix-online.org/documentation/reference/rosetta_install.html. I realize this is a newer compiler / glibc, but that doesn't seem to be the issue. Instead I seem to be seeing missing / incompatible header issues. Specifically, I get:

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Rosetta 3 - Build/Install

Where are exact source files for rosetta graphics 6.04 beta?

Submitted by Charlei Fenton on Fri, 2024-04-12 08:12
Category: 
Compilation

I'm hoping someone here can point me to the actual source tree that was used to build rosetta_graphics_6.04_x86_64-apple-darwin.

I am the long time volunteer Mac programmer for BOINC and am working on fixing the problems with the BOINC screensaver when running under MacOS 14 Sonoma. I want to build the Rosetta graphics app rosetta_graphics_6.04_x86_64-apple-darwin from the source files but link it with my modified BOINC libraries to confirm that my code fixes the screensaver for project graphics.

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Rosetta 3 - Build/Install

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