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Rosetta 3 - General
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error during docking by zhisheng » Thu, 2012-02-02 12:10 |
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9,371 |
by smlewis Mon, 2014-04-21 06:47 |
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How to input constraints? by violetsha7 » Wed, 2009-05-13 00:13 |
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9,355 |
by smlewis Mon, 2014-04-21 06:47 |
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How to get multiple chains in PDB from Fold and Dock by arthuc01 » Tue, 2012-05-29 02:05 |
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9,271 |
by arthuc01 Mon, 2014-04-21 06:47 |
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what is "-relax:sequence" ? by Anonymous » Fri, 2012-06-08 06:31 |
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9,240 |
by smlewis Mon, 2014-04-21 06:47 |
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hydrophobicity patch by Lindsay » Fri, 2012-05-04 08:24 |
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9,237 |
by Lindsay Mon, 2014-04-21 06:47 |
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Re: Protein-RNA interface design by bharat_46010 » Tue, 2015-04-07 04:44 |
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9,147 |
by rmoretti Mon, 2015-06-01 15:27 |
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input_score_filter not taken by program cluster ? by Anonymous » Mon, 2012-06-11 09:14 |
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9,139 |
by attesor Fri, 2014-10-31 04:49 |
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acceptable RMSD value in the clustered structures? by ritacc18 » Wed, 2013-06-19 14:53 |
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9,097 |
by rmoretti Mon, 2014-04-21 06:48 |
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Help with get_pdb.py for PDB file cleaning by lzx32 » Mon, 2011-03-28 02:11 |
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9,055 |
by smlewis Mon, 2014-04-21 06:47 |
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ERROR: Assertion Fdensity.u2 and Fdensity.u3 failed by ahmadkhalifa » Wed, 2017-12-06 07:38 |
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9,036 |
by brandon.frenz Thu, 2018-03-08 09:28 |
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Resfile by vijayaraj81 » Thu, 2014-02-27 01:14 |
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8,986 |
by vijayaraj81 Tue, 2014-03-04 05:07 |
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Problems with "pdb_renumber.py" in tutorial Advanced Protein-Protein Docking by Sunyp_IM » Sun, 2017-06-25 02:40 |
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8,984 |
by ac.research Mon, 2018-05-14 10:20 |
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Talaris score function by nawsad » Tue, 2013-05-21 03:32 |
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8,882 |
by rmoretti Mon, 2014-04-21 06:47 |
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Docking double-stranded DNA to a protein by xpzhang » Tue, 2012-01-31 12:35 |
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8,879 |
by xpzhang Mon, 2014-04-21 06:47 |
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pNNMAKE compilation by adva » Sun, 2012-12-02 03:59 |
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8,872 |
by smlewis Mon, 2014-04-21 06:47 |
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ERROR READING PDB FILE by asmi » Sat, 2011-02-26 07:23 |
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8,861 |
by smlewis Mon, 2014-04-21 06:47 |
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side-chain refinement by qlj » Wed, 2013-02-20 04:40 |
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8,790 |
by qlj Mon, 2014-04-21 06:47 |
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using constraints with AbinitioRelax (Rosetta 3.1) by ndousis » Fri, 2009-12-18 08:56 |
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8,745 |
by ndousis Mon, 2014-04-21 06:47 |
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Loop Modeling with fixed backbone by bharat_46010 » Mon, 2011-12-19 05:20 |
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8,735 |
by bharat_46010 Mon, 2014-04-21 06:47 |
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InterfaceAnalyzer packstat score = 0.000 by vmc99 » Fri, 2018-11-16 11:30 |
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8,670 |
by SenyorDrew Wed, 2019-06-12 14:10 |
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Clustering using an disrupted run silent file by PaulaBanks » Mon, 2013-07-15 02:19 |
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8,661 |
by rmoretti Wed, 2014-09-24 09:57 |
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De novo Protein Design by ac.research » Sat, 2017-07-15 10:39 |
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8,596 |
by rmoretti Mon, 2017-08-14 09:06 |
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Using D-amino acids in Rosetta docking by moehle » Wed, 2011-06-01 00:49 |
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8,593 |
by moehle Mon, 2014-04-21 06:47 |
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Docking + Active Site Design by bharat_46010 » Sat, 2014-12-13 23:04 |
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8,510 |
by rmoretti Wed, 2015-01-21 08:43 |
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What is the general protocol for antibody-antigen docking without the native antibody-antigen structures? by Sunyp_IM » Sun, 2017-08-13 05:42 |
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8,432 |
by smlewis Tue, 2017-08-29 08:56 |
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kinematic loop modeling/sequence design keeps crashing with segmentation fault by banshee » Thu, 2013-03-28 09:52 |
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8,398 |
by smlewis Mon, 2014-04-21 06:47 |
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Debugging Rosetta under XCode by sacch » Sun, 2011-10-16 18:23 |
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8,392 |
by sacch Mon, 2014-04-21 06:47 |
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is it possible to generate models without hydrogen? by albumns » Fri, 2012-03-02 12:24 |
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8,345 |
by albumns Mon, 2014-04-21 06:47 |
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Looking for a pdb.... by MarkW » Mon, 2014-10-13 15:45 |
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8,335 |
by rmoretti Mon, 2014-11-03 16:30 |
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ERROR: Unused "free" argument specified: GDP.fa.tors by ahmadkhalifa » Fri, 2018-06-15 11:27 |
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8,314 |
by smlewis Tue, 2018-06-19 09:28 |
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The design of a helical peptide by Jacob-kong » Tue, 2012-06-26 06:26 |
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8,242 |
by Jacob-kong Mon, 2014-04-21 06:47 |
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Using Patches in Rosetta by JS » Wed, 2010-03-10 13:32 |
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8,233 |
by JS Mon, 2014-04-21 06:47 |
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Relax Refinement for complecated targets by jiongzhang » Fri, 2012-01-20 09:57 |
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8,193 |
by jiongzhang Mon, 2014-04-21 06:47 |
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ab inito memberane error by albumns » Mon, 2011-02-14 10:58 |
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8,107 |
by albumns Mon, 2014-04-21 06:47 |
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type of docking by rohi » Mon, 2020-07-06 06:55 |
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8,078 |
by rohi Sun, 2020-07-26 17:03 |
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how to transfer the rosetta score to physical unit? by Lindsay » Thu, 2012-06-28 09:33 |
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8,067 |
by Lindsay Mon, 2014-04-21 06:47 |
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Relax structure using Membrane Environment Scoring Function by anna.duncan » Thu, 2010-02-04 08:01 |
6 |
8,065 |
by jruhym Mon, 2014-04-21 06:47 |
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Rosetta3.3 enzyme_design errors by jtmacd » Wed, 2012-01-25 03:33 |
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8,043 |
by rmoretti Mon, 2014-04-21 06:47 |
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RosettaDock decoys recoring with ZRANK by cheyuk » Fri, 2014-04-11 01:40 |
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8,001 |
by rmoretti Thu, 2016-04-28 15:53 |
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Every thing Ok in PC end Error on Server by jrcf » Tue, 2016-03-22 07:21 |
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7,973 |
by jrcf Wed, 2016-03-23 12:16 |
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Error running Abinitio relax with @flags by samuelrpita » Mon, 2015-10-05 13:20 |
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7,949 |
by rmoretti Tue, 2015-10-27 09:11 |
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modeling residues with covalent ligand attachments by sid » Fri, 2011-04-15 09:16 |
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7,883 |
by rmoretti Fri, 2015-07-03 14:02 |
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Interface rmsd calculation Irms by mahajanr » Wed, 2010-07-07 18:24 |
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7,879 |
by mahajanr Mon, 2014-04-21 06:47 |
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uninstalling or rebuilding rosetta by rlwoltz » Thu, 2013-04-11 11:45 |
5 |
7,879 |
by rlwoltz Mon, 2014-04-21 06:47 |
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ERROR: Unable to open weights/patch file by peony » Sun, 2013-11-17 02:49 |
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7,874 |
by rmoretti Tue, 2019-07-09 10:29 |
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errors while running rosetta 3.1 by isengupta13 » Tue, 2011-05-17 18:11 |
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7,838 |
by jurkm Mon, 2014-04-21 06:47 |
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cutpoint error! by monos_morpheus » Thu, 2011-04-07 08:04 |
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7,780 |
by monos_morpheus Mon, 2014-04-21 06:47 |
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Rosetta3 Tutorials Beta Release by smlewis » Fri, 2011-08-19 13:35 |
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7,738 |
by smlewis Mon, 2014-04-21 06:47 |
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RosettaVIP by nick.polizzi » Tue, 2013-08-06 15:13 |
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7,738 |
by rmoretti Mon, 2014-04-21 06:48 |
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AbinitioRelax under different directories without -constant_seed -jran flag by xpzhang » Wed, 2010-09-15 14:56 |
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7,668 |
by rmoretti Mon, 2014-04-21 06:47 |
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Fe3p Heme Iron Unrecognized Despite Loading Hem Params by vsjasion » Fri, 2011-09-02 10:37 |
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7,652 |
by tigerous Mon, 2014-04-21 06:47 |
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building a 77 aa long protein fragment by tevang » Sat, 2010-02-20 11:37 |
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7,585 |
by gsmurphy Mon, 2014-04-21 06:47 |
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Using rosetta 3 to make a fragment library and then use it to model loop of a protein structure by bharat_46010 » Sun, 2011-01-23 05:22 |
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7,521 |
by dgront Mon, 2014-04-21 06:47 |
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This element is not expected. by ac.research » Fri, 2017-10-13 03:47 |
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7,462 |
by vmulligan Thu, 2020-07-16 23:31 |
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Energy calculation for protein design by Filipe » Sat, 2011-11-26 15:01 |
4 |
7,393 |
by Filipe Mon, 2014-04-21 06:47 |
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extraction of pdbs from silent.out files on Mac by pramod » Tue, 2014-01-07 11:43 |
5 |
7,383 |
by rmoretti Mon, 2014-04-21 06:48 |
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A question about Multiple constraints by kxiao » Mon, 2014-06-16 07:02 |
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7,382 |
by masterofpuppets Fri, 2014-12-19 08:30 |
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Error with non-canonical amino acid in SnugDock. by sk0319 » Thu, 2016-12-29 16:12 |
8 |
7,357 |
by sk0319 Wed, 2017-01-11 10:52 |
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Reproducing Rosetta++ scoring function with Rosetta 3? by JuliusSu » Mon, 2014-03-17 21:15 |
7 |
7,356 |
by JuliusSu Wed, 2014-03-19 20:38 |
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Cannot run binaries after successful compilation by ac.research » Mon, 2017-08-14 02:56 |
6 |
7,322 |
by ac.research Fri, 2017-08-18 00:57 |
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pdb files in Rosetta format by zhisheng » Mon, 2011-10-31 08:52 |
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7,268 |
by smlewis Mon, 2014-04-21 06:47 |
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What's a good application to thread a sequence over a peptide (of a peptide-protein complex) and minimize? by brspurri » Tue, 2013-02-12 08:19 |
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7,210 |
by smlewis Mon, 2014-04-21 06:47 |
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cluster pdb structures questions by ritacc18 » Thu, 2013-03-28 19:20 |
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7,173 |
by ritacc18 Mon, 2014-04-21 06:47 |
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How to define specific residues in alascan ? by Park » Mon, 2011-06-13 19:56 |
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7,151 |
by smlewis Mon, 2014-04-21 06:47 |
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rerun same experiment on MPI. by exchhattu » Tue, 2010-02-23 21:14 |
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7,099 |
by exchhattu Mon, 2014-04-21 06:47 |
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What is a "silent file"? by lanselibai » Mon, 2014-09-22 02:43 |
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7,082 |
by lanselibai Mon, 2014-09-22 08:13 |
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defining interface in interface analyzer by aa20 » Fri, 2013-09-27 11:08 |
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7,030 |
by smlewis Mon, 2014-04-21 06:48 |
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log files by shadrinams » Fri, 2018-01-26 07:29 |
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6,972 |
by shadrinams Mon, 2018-02-12 11:47 |
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How does one prevent Rosetta from connecting two separate chains? by jhbrown » Thu, 2011-12-15 14:08 |
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6,969 |
by Anonymous Mon, 2014-04-21 06:47 |
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I am a beginner in rosetta software and need help to build params file by nais » Fri, 2011-03-18 13:37 |
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6,925 |
by rmoretti Mon, 2014-04-21 06:47 |
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mitochondria protein modeling by rlwoltz » Fri, 2012-10-26 14:32 |
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6,905 |
by smlewis Mon, 2014-04-21 06:47 |
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Loop Modeling Deletes Residues by Julix » Wed, 2012-09-05 10:14 |
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6,884 |
by smlewis Mon, 2014-04-21 06:47 |
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Question on eval_atom_derivative function. by Al52 » Thu, 2015-12-03 16:17 |
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6,871 |
by rmoretti Thu, 2016-02-04 09:29 |
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SASA packing score in Rosetta 3.1 by enoee » Wed, 2010-07-28 01:45 |
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6,845 |
by smlewis Mon, 2014-04-21 06:47 |
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Structure refinement guided by Cryo-EM density maps by ahmadkhalifa » Thu, 2018-03-08 08:22 |
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6,811 |
by ahmadkhalifa Tue, 2018-05-01 09:04 |
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Error_fragment_generation by Payal Chatterjee » Fri, 2016-02-12 12:11 |
6 |
6,776 |
by G Mustafa Fri, 2021-09-10 01:16 |
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best_ifaceE.py error by rosa » Fri, 2013-07-12 08:35 |
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6,758 |
by rosa Mon, 2014-04-21 06:48 |
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optH flag makes hydrogen bond energy scores worse... by tsjain » Fri, 2012-07-13 14:04 |
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6,717 |
by smlewis Mon, 2014-04-21 06:47 |
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About align hundreds of pdb structures produced by rosseta membrane abinitio by ritacc18 » Wed, 2013-05-22 12:37 |
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6,717 |
by ssrb Tue, 2015-09-22 08:35 |
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P-P docking with ambiguous constraints by Anouk » Fri, 2013-11-08 11:38 |
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6,714 |
by rmoretti Mon, 2014-04-21 06:48 |
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how to use AbinitioRelax.mpi.linuxgccrelease? by albumns » Mon, 2012-03-26 22:50 |
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6,702 |
by smlewis Mon, 2014-04-21 06:47 |
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first try at relaxing a structure by einew » Wed, 2011-01-05 11:09 |
4 |
6,699 |
by einew Mon, 2014-04-21 06:47 |
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Using 2 non-standard residues in one run by einew » Tue, 2011-03-08 21:24 |
5 |
6,641 |
by einew Mon, 2014-04-21 06:47 |
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Problem with clustering 1000 centroid pdbs by doranhen » Sat, 2012-04-28 10:34 |
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6,630 |
by doranhen Mon, 2014-04-21 06:47 |
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loop remodelling with a fixed bound DNA by jtmacd » Thu, 2010-02-25 03:23 |
8 |
6,597 |
by jtmacd Mon, 2014-04-21 06:47 |
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Question regarding buried or exposed residues by qlj » Fri, 2012-11-09 23:43 |
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6,594 |
by qlj Mon, 2014-04-21 06:47 |
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Is the packer aware of non canonical amino acids? by krdav » Tue, 2016-08-16 08:16 |
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6,566 |
by krdav Wed, 2016-08-17 12:57 |
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ERROR: compiling rosetta3.1 with MPI by biofisikx » Thu, 2010-08-05 16:00 |
6 |
6,546 |
by smlewis Mon, 2014-04-21 06:47 |
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General Protein Folding Question by twopint23oz » Sun, 2012-04-01 22:57 |
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6,518 |
by smlewis Mon, 2014-04-21 06:47 |
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Possible Shellshock Patch problem results in no output files being written by hazards » Wed, 2014-10-22 13:48 |
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6,515 |
by rmoretti Mon, 2014-11-03 16:39 |
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how to cluster loop? by albumns » Wed, 2011-01-05 19:48 |
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6,503 |
by smlewis Mon, 2014-04-21 06:47 |
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Constraints and final scoring of satisfied constraints in ab initio by Azadeh » Tue, 2014-07-15 01:29 |
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6,482 |
by rmoretti Thu, 2014-07-17 09:21 |
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Getting an interface score from RosettaDock without docking by rosend » Fri, 2015-12-18 14:02 |
3 |
6,476 |
by rosend Fri, 2015-12-18 19:39 |
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Reading FE from 2PAH by jadolfbr » Tue, 2013-01-29 16:10 |
5 |
6,460 |
by rmoretti Mon, 2014-04-21 06:47 |
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Loop modeling with ligand in the receptor by cno » Mon, 2010-12-13 14:07 |
5 |
6,458 |
by smlewis Mon, 2014-04-21 06:47 |
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what rotamer lib is used in rosetta3.5? by Lindsay » Thu, 2014-02-06 16:11 |
6 |
6,454 |
by rmoretti Fri, 2014-03-28 09:03 |
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Introduction or tutorial about RosettaMatch by kwak » Thu, 2010-10-21 06:37 |
4 |
6,449 |
by kwak Mon, 2014-04-21 06:47 |
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ETABLE constraint function type by allan.ferrari » Tue, 2017-01-10 08:01 |
8 |
6,447 |
by smlewis Sun, 2017-01-15 18:14 |
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Robetta fragments and silent.out-file by masterofpuppets » Wed, 2015-01-07 04:28 |
5 |
6,446 |
by masterofpuppets Tue, 2015-02-10 03:15 |
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Unrecognized residue Glc by cgautier » Tue, 2015-03-31 02:20 |
5 |
6,433 |
by rmoretti Thu, 2015-04-16 10:09 |
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