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Rosetta 3 - General

Topic / Topic starter Repliessort descending Views Last post
Normal topic how to transfer the rosetta score to physical unit?
by Lindsay » Thu, 2012-06-28 09:33
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6,369 by Lindsay
Mon, 2014-04-21 06:47
Normal topic relax structure before design?
by Lindsay » Tue, 2013-11-05 20:50
7
8,069 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Error when renumbering PDB
by dzhao » Wed, 2012-07-18 01:03
7
7,588 by rmoretti
Mon, 2014-04-21 06:47
Normal topic hydrophobicity patch
by Lindsay » Fri, 2012-05-04 08:24
7
7,179 by Lindsay
Mon, 2014-04-21 06:47
Normal topic Rosetta (antibody_designer) performance
by Kihang _Youn » Wed, 2022-03-02 00:48
7
378 by Kihang _Youn
Thu, 2022-03-10 16:30
Normal topic errors while running rosetta 3.1
by isengupta13 » Tue, 2011-05-17 18:11
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6,409 by jurkm
Mon, 2014-04-21 06:47
Normal topic ERROR READING PDB FILE
by asmi » Sat, 2011-02-26 07:23
7
7,055 by smlewis
Mon, 2014-04-21 06:47
Normal topic cutpoint error!
by monos_morpheus » Thu, 2011-04-07 08:04
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6,050 by monos_morpheus
Mon, 2014-04-21 06:47
Normal topic rerun same experiment on MPI.
by exchhattu » Tue, 2010-02-23 21:14
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5,633 by exchhattu
Mon, 2014-04-21 06:47
Normal topic how to optimize the weights?
by Lindsay » Tue, 2012-04-10 07:40
7
4,867 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Rosetta3.3 enzyme_design errors
by jtmacd » Wed, 2012-01-25 03:33
7
6,518 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Help with get_pdb.py for PDB file cleaning
by lzx32 » Mon, 2011-03-28 02:11
7
7,547 by smlewis
Mon, 2014-04-21 06:47
Normal topic Talaris score function
by nawsad » Tue, 2013-05-21 03:32
7
7,181 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Structure refinement guided by Cryo-EM density maps
by ahmadkhalifa » Thu, 2018-03-08 08:22
7
4,843 by ahmadkhalifa
Tue, 2018-05-01 09:04
Normal topic Error running Abinitio relax with @flags
by samuelrpita » Mon, 2015-10-05 13:20
7
6,220 by rmoretti
Tue, 2015-10-27 09:11
Normal topic Docking + Active Site Design
by bharat_46010 » Sat, 2014-12-13 23:04
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6,693 by rmoretti
Wed, 2015-01-21 08:43
Normal topic Rosetta3 Tutorials Beta Release
by smlewis » Fri, 2011-08-19 13:35
7
6,164 by smlewis
Mon, 2014-04-21 06:47
Normal topic Loop Modeling Deletes Residues
by Julix » Wed, 2012-09-05 10:14
7
5,410 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to input constraints?
by violetsha7 » Wed, 2009-05-13 00:13
7
7,453 by smlewis
Mon, 2014-04-21 06:47
Normal topic log files
by shadrinams » Fri, 2018-01-26 07:29
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4,858 by shadrinams
Mon, 2018-02-12 11:47
Normal topic Is the packer aware of non canonical amino acids?
by krdav » Tue, 2016-08-16 08:16
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4,901 by krdav
Wed, 2016-08-17 12:57
Normal topic about Residue Number in Rosetta
by jiongzhang » Mon, 2012-06-11 14:58
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8,565 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to deal with Cu-as a ligand or as part of the receptor?
by hanypao » Fri, 2011-09-30 18:50
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8,580 by rmoretti
Mon, 2014-04-21 06:47
Normal topic best_ifaceE.py error
by rosa » Fri, 2013-07-12 08:35
7
5,165 by rosa
Mon, 2014-04-21 06:48
Normal topic A question about Multiple constraints
by kxiao » Mon, 2014-06-16 07:02
7
5,609 by masterofpuppets
Fri, 2014-12-19 08:30
Normal topic Question on eval_atom_derivative function.
by Al52 » Thu, 2015-12-03 16:17
7
5,070 by rmoretti
Thu, 2016-02-04 09:29
Normal topic Using D-amino acids in Rosetta docking
by moehle » Wed, 2011-06-01 00:49
7
7,070 by moehle
Mon, 2014-04-21 06:47
Normal topic Reproducing Rosetta++ scoring function with Rosetta 3?
by JuliusSu » Mon, 2014-03-17 21:15
7
5,666 by JuliusSu
Wed, 2014-03-19 20:38
Normal topic Antibody homology modeling fails after blastp
by sunhwan » Sat, 2017-02-18 11:25
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4,425 by sunhwan
Mon, 2017-02-27 11:02
Normal topic How does one prevent Rosetta from connecting two separate chains?
by jhbrown » Thu, 2011-12-15 14:08
7
5,553 by Anonymous
Mon, 2014-04-21 06:47
Normal topic General Protein Folding Question
by twopint23oz » Sun, 2012-04-01 22:57
7
5,137 by smlewis
Mon, 2014-04-21 06:47
Normal topic AbinitioRelax using multiple cores on a single machine without mpi?
by JoG » Tue, 2011-10-25 00:40
7
9,649 by smlewis
Mon, 2014-04-21 06:47
Normal topic ETABLE constraint function type
by allan.ferrari » Tue, 2017-01-10 08:01
8
4,539 by smlewis
Sun, 2017-01-15 18:14
Normal topic talaris2013 energy terms modifications
by peony » Sat, 2013-11-23 02:48
8
13,154 by rmoretti
Mon, 2014-04-21 06:48
Normal topic RosettaVIP
by nick.polizzi » Tue, 2013-08-06 15:13
8
5,808 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Every thing Ok in PC end Error on Server
by jrcf » Tue, 2016-03-22 07:21
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5,918 by jrcf
Wed, 2016-03-23 12:16
Normal topic using constraints with AbinitioRelax (Rosetta 3.1)
by ndousis » Fri, 2009-12-18 08:56
8
6,777 by ndousis
Mon, 2014-04-21 06:47
Normal topic Rosetta3 Tutorials
by smlewis » Fri, 2011-11-18 07:33
8
14,999 by rmoretti
Tue, 2019-07-09 10:24
Normal topic Rosetta job distribution error
by ss » Thu, 2019-08-01 09:26
8
3,402 by ac.research
Mon, 2020-02-10 08:19
Normal topic Debugging Rosetta under XCode
by sacch » Sun, 2011-10-16 18:23
8
6,476 by sacch
Mon, 2014-04-21 06:47
Normal topic Looking for a pdb....
by MarkW » Mon, 2014-10-13 15:45
8
6,425 by rmoretti
Mon, 2014-11-03 16:30
Normal topic memory issue rosetta3.4 scripts
by ast » Mon, 2013-01-28 06:25
8
7,808 by smlewis
Mon, 2014-04-21 06:47
Normal topic kinematic loop modeling/sequence design keeps crashing with segmentation fault
by banshee » Thu, 2013-03-28 09:52
8
6,587 by smlewis
Mon, 2014-04-21 06:47
Normal topic Submitting job to local cluster
by tusharranjanmoharana » Fri, 2016-04-15 01:38
8
7,604 by rmoretti
Mon, 2016-05-09 09:23
Normal topic loop remodelling with a fixed bound DNA
by jtmacd » Thu, 2010-02-25 03:23
8
5,018 by jtmacd
Mon, 2014-04-21 06:47
Normal topic how to design binding interface?
by Lindsay » Mon, 2013-12-02 19:06
8
8,626 by rmoretti
Tue, 2019-07-09 12:50
Normal topic Error with non-canonical amino acid in SnugDock.
by sk0319 » Thu, 2016-12-29 16:12
8
5,360 by sk0319
Wed, 2017-01-11 10:52
Normal topic building a 77 aa long protein fragment
by tevang » Sat, 2010-02-20 11:37
8
5,914 by gsmurphy
Mon, 2014-04-21 06:47
Normal topic Problems with Cterm_amidation.txt
by helenah » Thu, 2020-10-08 04:52
8
2,576 by helenah
Tue, 2020-11-03 04:33
Normal topic Resfile
by vijayaraj81 » Thu, 2014-02-27 01:14
8
6,793 by vijayaraj81
Tue, 2014-03-04 05:07
Normal topic Clustering using an disrupted run silent file
by PaulaBanks » Mon, 2013-07-15 02:19
9
6,508 by rmoretti
Wed, 2014-09-24 09:57
Normal topic input_score_filter not taken by program cluster ?
by Anonymous » Mon, 2012-06-11 09:14
9
7,143 by attesor
Fri, 2014-10-31 04:49
Normal topic Loop Modeling with fixed backbone
by bharat_46010 » Mon, 2011-12-19 05:20
9
6,907 by bharat_46010
Mon, 2014-04-21 06:47
Normal topic is it possible to generate models without hydrogen?
by albumns » Fri, 2012-03-02 12:24
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6,615 by albumns
Mon, 2014-04-21 06:47
Normal topic How to calculate the binding energy of peptide and a protein?
by tianbu » Thu, 2014-02-13 20:44
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8,904 by tianbu
Mon, 2014-02-17 03:36
Normal topic Problems with "pdb_renumber.py" in tutorial Advanced Protein-Protein Docking
by Sunyp_IM » Sun, 2017-06-25 02:40
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5,955 by ac.research
Mon, 2018-05-14 10:20
Normal topic How to get multiple chains in PDB from Fold and Dock
by arthuc01 » Tue, 2012-05-29 02:05
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7,394 by arthuc01
Mon, 2014-04-21 06:47
Normal topic energy minimization of loop only
by jtmacd » Wed, 2011-01-12 07:09
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8,475 by lanselibai
Wed, 2014-10-15 01:41
Normal topic Re: Protein-RNA interface design
by bharat_46010 » Tue, 2015-04-07 04:44
9
6,954 by rmoretti
Mon, 2015-06-01 15:27
Normal topic Rosetta reference energy
by Lindsay » Mon, 2012-05-07 07:56
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7,466 by Lindsay
Mon, 2014-04-21 06:47
Normal topic MPI stall
by jadolfbr » Thu, 2013-10-10 18:59
9
8,344 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Change in binding energy after mutation in interface?
by cossio » Mon, 2014-12-01 06:27
9
8,999 by rmoretti
Thu, 2015-04-30 16:25
Normal topic flexible backbone design (fixbb+relax)
by sdh_h » Mon, 2013-02-04 03:19
9
9,273 by gsmurphy
Mon, 2014-04-21 06:47
Normal topic Running a ReportFSC mover between two .mrc maps
by ahmadkhalifa » Mon, 2018-03-12 07:52
9
4,096 by brandon.frenz
Tue, 2018-03-20 10:28
Normal topic Can Fold-and-dock protocol applied to membrane proteins
by justin » Thu, 2011-07-21 00:14
9
7,371 by wangyr
Mon, 2014-04-21 06:47
Normal topic AbinitioRelax with very small peptides
by jamsmad » Tue, 2012-09-04 13:45
9
7,456 by jamsmad
Mon, 2014-04-21 06:47
Normal topic ERROR: Unused "free" argument specified: GDP.fa.tors
by ahmadkhalifa » Fri, 2018-06-15 11:27
10
5,360 by smlewis
Tue, 2018-06-19 09:28
Normal topic what is "-relax:sequence" ?
by Anonymous » Fri, 2012-06-08 06:31
10
7,083 by smlewis
Mon, 2014-04-21 06:47
Normal topic Does the fold count reset if abinitio is restarted?
by burkheadlab » Mon, 2011-06-13 11:39
10
7,550 by rmoretti
Thu, 2017-02-02 08:32
Normal topic How do you implement phosphoserine in ab -initio folding?
by smiruthi » Fri, 2011-12-16 14:45
10
7,801 by brspurri
Mon, 2014-04-21 06:47
Normal topic pNNMAKE compilation
by adva » Sun, 2012-12-02 03:59
10
6,698 by smlewis
Mon, 2014-04-21 06:47
Normal topic Remote access to Rosetta on Blue Gene or another HPC system?
by rfieldhouse » Mon, 2011-05-16 08:40
10
7,524 by rfieldhouse
Mon, 2014-04-21 06:47
Normal topic error during docking
by zhisheng » Thu, 2012-02-02 12:10
10
7,404 by smlewis
Mon, 2014-04-21 06:47
Normal topic Using Degenerate Protons in Rosetta3.x
by jurkm » Wed, 2011-06-08 03:25
10
9,017 by jurkm
Mon, 2014-04-21 06:47
Normal topic Relax Refinement for complecated targets
by jiongzhang » Fri, 2012-01-20 09:57
10
6,277 by jiongzhang
Mon, 2014-04-21 06:47
Normal topic latest version of rosetta--unable to build models
by pramod » Mon, 2014-11-03 11:40
10
8,395 by jadolfbr
Wed, 2014-11-26 11:40
Normal topic disulfide bonds using abinitio folding module
by crfenollar » Wed, 2010-02-24 03:26
10
10,776 by lanselibai
Tue, 2015-02-10 14:03
Normal topic Modeling of a Multi-Domain Dimer
by jurkm » Mon, 2011-08-29 01:39
10
8,728 by jurkm
Mon, 2014-04-21 06:47
Normal topic CryoEM model refinement with covalent conjugated prosthetic Phosphopantetheine carrying acyl group
by ZhijunW » Thu, 2020-09-03 18:36
11
3,296 by matteoferla
Sat, 2020-09-12 03:02
Normal topic AB INITIO WITH METALLOPROTEIN
by kaue » Sun, 2012-06-17 14:04
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10,117 by masterofpuppets
Tue, 2015-02-10 01:33
Normal topic Histidine protonation
by DmitriiN » Mon, 2016-09-26 13:15
11
13,607 by rmoretti
Mon, 2018-01-15 15:37
Normal topic type of docking
by rohi » Mon, 2020-07-06 06:55
11
3,984 by rohi
Sun, 2020-07-26 17:03
Normal topic How to do ab initio with fixed part of protein
by eunwook » Tue, 2013-04-16 03:00
11
9,607 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Constraints in Loop Modeling
by Julix » Wed, 2012-12-05 07:08
11
8,346 by rmoretti
Mon, 2014-04-21 06:47
Normal topic fragment-based loop modeling to get a helix at the loop site
by berk » Wed, 2013-05-29 06:00
11
7,808 by rmoretti
Mon, 2014-04-21 06:47
Normal topic how to design a protein complex
by Lindsay » Tue, 2013-11-05 20:24
11
10,088 by Lindsay
Mon, 2014-04-21 06:48
Normal topic How to obtain alignment file for comparative modeling under Rosetta 3.1?
by lennylv » Tue, 2010-05-25 01:29
11
14,531 by sabine
Mon, 2014-04-21 06:47
Normal topic Rosetta 3.1 compile error, Linux 32 bit
by viochemist » Thu, 2010-07-29 08:40
11
9,996 by smlewis
Mon, 2014-04-21 06:47
Normal topic InterfaceAnalyzer packstat score = 0.000
by vmc99 » Fri, 2018-11-16 11:30
11
5,474 by SenyorDrew
Wed, 2019-06-12 14:10
Normal topic Error when running prepack of PLEXPEPDOCKING
by phanvy » Wed, 2014-06-18 07:11
11
8,548 by G Mustafa
Fri, 2021-09-10 08:20
Normal topic Is it possible to do Abinitio folding from a linear structure.?
by monos_morpheus » Sat, 2011-04-16 09:13
11
7,556 by monos_morpheus
Mon, 2014-04-21 06:47
Normal topic What is the general protocol for antibody-antigen docking without the native antibody-antigen structures?
by Sunyp_IM » Sun, 2017-08-13 05:42
11
5,844 by smlewis
Tue, 2017-08-29 08:56
Normal topic -dock_pert problem
by mahajanr » Mon, 2010-07-19 15:45
11
8,434 by weitzner
Mon, 2014-04-21 06:47
Normal topic Anyone here knows what is the protocol capture archive???????!!
by MajorID » Thu, 2011-06-02 01:50
12
9,686 by rmoretti
Fri, 2015-04-24 12:15
Normal topic I'm a total beginner to Rosetta 3.2 and there are no tutorials for me to follow. Can someone help.? =)
by monos_morpheus » Wed, 2011-02-02 08:11
12
8,801 by monos_morpheus
Mon, 2014-04-21 06:47
Normal topic B1_SampleSegment1.sh from RosettaES tutorial crashes
by ab » Tue, 2017-07-04 08:42
12
6,635 by brandon.frenz
Sat, 2017-07-08 13:49
Normal topic covalent ligand docking in Rosetta
by rohi » Mon, 2021-06-07 06:39
12
2,746 by matteoferla
Wed, 2021-07-14 04:03
Normal topic make_fragment.pl Error!
by Apiwat » Sat, 2014-02-15 13:35
12
11,129 by Apiwat
Tue, 2014-03-11 09:42
Normal topic Why are all source codes .gz and not .tgz
by jasnyderjr » Tue, 2016-12-20 21:23
12
7,305 by smlewis
Thu, 2016-12-22 13:11
Normal topic Docking an iron atom to a peptide
by buzb » Wed, 2011-01-26 09:49
12
11,377 by smlewis
Mon, 2014-04-21 06:47
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