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Rosetta 3 - General
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pro_closure energy scoring function by peony » Sat, 2013-11-16 13:22 |
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5,190 |
by rmoretti Mon, 2014-04-21 06:48 |
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Error when using RabD with a nanobody. by zhangying1990 » Mon, 2018-12-17 04:40 |
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3,220 |
by jadolfbr Mon, 2019-01-28 08:46 |
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loop modelling error on Rosetta3.2 or Rosetta3.3 by exchhattu » Thu, 2011-09-29 03:58 |
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4,438 |
by rpache Mon, 2014-04-21 06:47 |
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de novo RNA loop by c.ocasion » Sun, 2021-02-14 18:34 |
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1,925 |
by everyday847 Mon, 2021-03-29 20:19 |
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Access sigma values for rotamers by pachecoj » Thu, 2014-05-15 07:10 |
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4,759 |
by rmoretti Sat, 2014-05-17 14:10 |
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Chain specific flags by helenah » Mon, 2020-10-19 03:31 |
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2,167 |
by rmoretti Fri, 2020-11-06 08:04 |
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rosetta_scripts_BOGUS coords warning message by Karol » Tue, 2016-12-13 02:35 |
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4,581 |
by Karol Thu, 2016-12-15 01:35 |
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Problem with undetected lower and upper terminus variants for new polymer by Martin Floor » Sat, 2022-06-11 06:51 |
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843 |
by matteoferla Fri, 2022-07-01 13:49 |
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Abinitio Calculations - typical parameters by vamsi » Thu, 2010-11-11 07:06 |
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5,191 |
by smlewis Mon, 2014-04-21 06:47 |
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match_dspos1 and other matcher options by petrikigor » Sat, 2012-10-20 09:22 |
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4,805 |
by rmoretti Mon, 2014-04-21 06:47 |
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Problems with disulphide bonds during KIC by Loki01 » Tue, 2017-11-28 03:11 |
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3,549 |
by Loki01 Thu, 2017-12-14 06:20 |
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Rotate MOVER by gw » Wed, 2012-08-15 12:09 |
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4,693 |
by glemmon Mon, 2014-04-21 06:47 |
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protein binding energy problem by Lindsay » Thu, 2014-04-17 23:10 |
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5,065 |
by jadolfbr Mon, 2014-04-21 07:30 |
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Error when running "plot_LHOC.py" by Sunyp_IM » Sun, 2017-08-13 05:54 |
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3,518 |
by smlewis Wed, 2017-08-16 08:30 |
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comparison of energy by sdh » Mon, 2010-08-16 07:55 |
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4,630 |
by smlewis Mon, 2014-04-21 06:47 |
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P-P docking with ambiguous constraints by Anouk » Fri, 2013-11-08 11:38 |
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5,889 |
by rmoretti Mon, 2014-04-21 06:48 |
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Rotamer Library Generation in Rosetta3 by jcminerlanl » Wed, 2016-11-30 07:34 |
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4,793 |
by rmoretti Tue, 2021-02-09 11:52 |
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BridgeChainsMover by msardejani » Sun, 2016-08-07 17:32 |
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4,247 |
by smlewis Tue, 2016-08-30 13:47 |
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ignore loops on threading by fred » Tue, 2014-11-11 11:33 |
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4,525 |
by rmoretti Tue, 2014-11-18 10:01 |
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Typical relax options not applied in relax.mpi.linuxiccrelease?? by David Weis » Mon, 2017-02-27 11:35 |
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3,954 |
by rmoretti Thu, 2017-08-03 09:01 |
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Rosetta-foldtree and docking by tingting » Tue, 2022-03-15 22:49 |
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929 |
by aastha.pal Mon, 2022-06-27 09:55 |
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Relax command for docking purposes and cluster_vs_rmsd command by Rkfoury » Wed, 2015-04-01 08:48 |
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4,919 |
by rmoretti Sat, 2015-04-25 10:05 |
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Secondary Structure Relax by ac.research » Sat, 2018-03-17 10:50 |
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3,642 |
by smlewis Wed, 2018-03-21 08:42 |
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Using 2 non-standard residues in one run by einew » Tue, 2011-03-08 21:24 |
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5,762 |
by einew Mon, 2014-04-21 06:47 |
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Evaluating energies on non-standard rotamer set by pachecoj » Sat, 2014-07-26 16:27 |
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4,260 |
by pachecoj Sat, 2014-08-09 06:33 |
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Efficient implementation of MPI with protein design programs by zachdebruine » Thu, 2018-06-28 10:41 |
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3,531 |
by smlewis Tue, 2018-07-03 11:22 |
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P(Res | phi,psi ) by jadolfbr » Thu, 2011-07-21 08:49 |
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4,265 |
by jadolfbr Mon, 2014-04-21 06:47 |
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RosettaMatch by jtmacd » Wed, 2012-01-11 06:50 |
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8,826 |
by jtmacd Mon, 2014-04-21 06:47 |
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Suppress printing to STDOUT for applications by tylerborrman » Tue, 2015-11-24 11:37 |
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4,643 |
by code_Monkey Thu, 2021-03-18 08:03 |
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how to cluster loop? by albumns » Wed, 2011-01-05 19:48 |
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5,687 |
by smlewis Mon, 2014-04-21 06:47 |
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optH flag makes hydrogen bond energy scores worse... by tsjain » Fri, 2012-07-13 14:04 |
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5,929 |
by smlewis Mon, 2014-04-21 06:47 |
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selecting pivot_residue in Backrub for ensemble generation by rohi » Fri, 2020-08-07 15:41 |
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2,980 |
by matteoferla Tue, 2020-08-11 10:00 |
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Native gives higher (positive) than lowest energy and clustered decoys by tiagogomes89 » Thu, 2011-06-02 07:19 |
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4,847 |
by rmoretti Mon, 2014-04-21 06:47 |
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abinitiorelax: No funnel by cno » Tue, 2010-07-27 06:14 |
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4,770 |
by biofisikx Mon, 2014-04-21 06:47 |
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How to run Rosetta3 in parallel by lennylv » Mon, 2009-03-30 04:21 |
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8,621 |
by rmoretti Mon, 2014-04-21 06:47 |
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membrane ab initio error after montecarlo by adva » Mon, 2012-12-24 01:43 |
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5,304 |
by tevang Mon, 2014-04-21 06:47 |
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Comparative Modeling databases? by nitroamos » Wed, 2011-11-23 14:54 |
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5,511 |
by rmoretti Thu, 2016-04-28 16:15 |
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Public subversion / Enzyme design public app by weallen » Tue, 2009-08-11 20:50 |
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4,647 |
by weallen Mon, 2014-04-21 06:47 |
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RosettaHoles by ge0rgekh0ury » Mon, 2012-01-09 09:01 |
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5,399 |
by Anonymous Mon, 2014-04-21 06:47 |
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Fixed bb design with hydrogen bond constraint by bharat_46010 » Mon, 2012-04-30 22:56 |
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5,259 |
by smlewis Mon, 2014-04-21 06:47 |
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side-chain refinement by qlj » Wed, 2013-02-20 04:40 |
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7,756 |
by qlj Mon, 2014-04-21 06:47 |
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Error_fragment_generation by Payal Chatterjee » Fri, 2016-02-12 12:11 |
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5,703 |
by G Mustafa Fri, 2021-09-10 01:16 |
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How to define specific residues in alascan ? by Park » Mon, 2011-06-13 19:56 |
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6,342 |
by smlewis Mon, 2014-04-21 06:47 |
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calculated ddG_bind converges to zero by fukamitka » Mon, 2013-06-24 20:32 |
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5,189 |
by fukamitka Mon, 2014-04-21 06:48 |
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Give preference to native residue during fixed backbone designing by tusharranjanmoharana » Mon, 2016-04-04 12:43 |
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4,732 |
by rmoretti Thu, 2016-04-28 15:19 |
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Memory leak when PDB preparation by Jacky010 » Mon, 2019-05-06 01:28 |
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3,302 |
by Jacky010 Tue, 2019-05-14 01:24 |
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AbinitioRelax under different directories without -constant_seed -jran flag by xpzhang » Wed, 2010-09-15 14:56 |
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6,752 |
by rmoretti Mon, 2014-04-21 06:47 |
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Problem with clustering 1000 centroid pdbs by doranhen » Sat, 2012-04-28 10:34 |
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5,924 |
by doranhen Mon, 2014-04-21 06:47 |
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This element is not expected. by ac.research » Fri, 2017-10-13 03:47 |
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5,981 |
by vmulligan Thu, 2020-07-16 23:31 |
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Fe3p Heme Iron Unrecognized Despite Loading Hem Params by vsjasion » Fri, 2011-09-02 10:37 |
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6,813 |
by tigerous Mon, 2014-04-21 06:47 |
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modeling loops between domains by dhorita » Thu, 2009-03-05 14:48 |
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4,873 |
by jarod Mon, 2014-04-21 06:47 |
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How do I add hydrogen atoms to my PDB file? by monos_morpheus » Wed, 2011-03-30 03:30 |
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12,411 |
by rmoretti Mon, 2014-04-21 06:47 |
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Can i start again the job ? by byin » Thu, 2011-09-15 01:19 |
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4,686 |
by byin Mon, 2014-04-21 06:47 |
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Cannot run binaries after successful compilation by ac.research » Mon, 2017-08-14 02:56 |
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6,038 |
by ac.research Fri, 2017-08-18 00:57 |
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NR Database Download in install_dependencies.pl (for make_fragments.pl) Broken by Jacob_Verburgt » Tue, 2020-03-10 08:58 |
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4,040 |
by Jacob_Verburgt Wed, 2020-03-11 05:18 |
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How to handle/retain Metals (Zn, Ca) inside the Protein? by aniyaz » Wed, 2023-01-11 03:21 |
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346 |
by rmoretti Mon, 2023-02-20 16:07 |
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dG_separated threshold for identifying non-binding peptides with InterfaceAnalyzer. by jyotisutar9 » Thu, 2016-12-01 00:39 |
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4,742 |
by jyotisutar9 Wed, 2016-12-14 09:39 |
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distances definition in course-grained (centroid mode) steps by allan.ferrari » Tue, 2017-01-03 05:15 |
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4,439 |
by allan.ferrari Tue, 2017-01-03 11:15 |
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What's a good application to thread a sequence over a peptide (of a peptide-protein complex) and minimize? by brspurri » Tue, 2013-02-12 08:19 |
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6,393 |
by smlewis Mon, 2014-04-21 06:47 |
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I used mpirun/mpiexec and it runs same job 32times by leygkn » Mon, 2020-09-21 00:53 |
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2,933 |
by jadolfbr Thu, 2020-09-24 10:04 |
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is it possible to ab initio only a part of a protein? by albumns » Sun, 2011-02-13 08:10 |
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4,151 |
by albumns Mon, 2014-04-21 06:47 |
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The design of a helical peptide by Jacob-kong » Tue, 2012-06-26 06:26 |
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7,327 |
by Jacob-kong Mon, 2014-04-21 06:47 |
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Atomic refinement with fixed ligand by ahmadkhalifa » Tue, 2018-07-24 10:41 |
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3,814 |
by rmoretti Mon, 2018-08-20 11:45 |
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pdb files in Rosetta format by zhisheng » Mon, 2011-10-31 08:52 |
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6,431 |
by smlewis Mon, 2014-04-21 06:47 |
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Don't want to output the design structure by Lindsay » Wed, 2012-05-02 08:02 |
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4,945 |
by Anonymous Mon, 2014-04-21 06:47 |
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No score.sc generated after running flexpepdock. by monos_morpheus » Sun, 2011-04-10 04:06 |
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5,395 |
by robren Mon, 2014-04-21 06:47 |
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Rosetta CM incorrect threading by ahmadkhalifa » Mon, 2018-08-06 11:09 |
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4,064 |
by rmoretti Fri, 2018-08-24 11:59 |
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Problem With Rosetta3.3 Comparative/Loop Modeling And Constraints by jurkm » Mon, 2011-09-12 01:01 |
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5,466 |
by jurkm Mon, 2014-04-21 06:47 |
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SASA packing score in Rosetta 3.1 by enoee » Wed, 2010-07-28 01:45 |
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5,974 |
by smlewis Mon, 2014-04-21 06:47 |
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Linker problems when building mini by assaff » Mon, 2009-10-12 01:07 |
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4,627 |
by smlewis Mon, 2014-04-21 06:47 |
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Rosetta CM - Ignore Sporadic Errors by Swillard » Wed, 2018-06-13 05:47 |
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3,645 |
by rmoretti Mon, 2018-11-12 14:29 |
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'-norepack_disulf' flag NOT work in Ligand-protein docking ? by darlintai » Tue, 2011-01-11 22:21 |
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5,338 |
by smlewis Mon, 2014-04-21 06:47 |
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Relax structure using Membrane Environment Scoring Function by anna.duncan » Thu, 2010-02-04 08:01 |
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7,181 |
by jruhym Mon, 2014-04-21 06:47 |
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two questions about "Prepare structures for use in Rosetta" by Anonymous » Wed, 2012-06-06 08:13 |
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5,246 |
by Anonymous Mon, 2014-04-21 06:47 |
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Energy Calculation in Rosetta3.4 by sdg_lab » Thu, 2012-04-12 04:49 |
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10,177 |
by rmoretti Mon, 2014-04-21 06:47 |
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Using Patches in Rosetta by JS » Wed, 2010-03-10 13:32 |
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7,232 |
by JS Mon, 2014-04-21 06:47 |
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mitochondria protein modeling by rlwoltz » Fri, 2012-10-26 14:32 |
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6,029 |
by smlewis Mon, 2014-04-21 06:47 |
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ERROR: compiling rosetta3.1 with MPI by biofisikx » Thu, 2010-08-05 16:00 |
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5,729 |
by smlewis Mon, 2014-04-21 06:47 |
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what rotamer lib is used in rosetta3.5? by Lindsay » Thu, 2014-02-06 16:11 |
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5,412 |
by rmoretti Fri, 2014-03-28 09:03 |
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Add a ligand with only one atom (i.e. Zn) to the RosettaCM by lanselibai » Tue, 2021-06-22 10:28 |
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1,758 |
by rmoretti Thu, 2021-06-24 12:23 |
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log files by shadrinams » Fri, 2018-01-26 07:29 |
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5,631 |
by shadrinams Mon, 2018-02-12 11:47 |
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Is the packer aware of non canonical amino acids? by krdav » Tue, 2016-08-16 08:16 |
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5,544 |
by krdav Wed, 2016-08-17 12:57 |
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about Residue Number in Rosetta by jiongzhang » Mon, 2012-06-11 14:58 |
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9,356 |
by smlewis Mon, 2014-04-21 06:47 |
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How to deal with Cu-as a ligand or as part of the receptor? by hanypao » Fri, 2011-09-30 18:50 |
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9,341 |
by rmoretti Mon, 2014-04-21 06:47 |
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best_ifaceE.py error by rosa » Fri, 2013-07-12 08:35 |
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5,757 |
by rosa Mon, 2014-04-21 06:48 |
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A question about Multiple constraints by kxiao » Mon, 2014-06-16 07:02 |
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6,331 |
by masterofpuppets Fri, 2014-12-19 08:30 |
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Question on eval_atom_derivative function. by Al52 » Thu, 2015-12-03 16:17 |
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5,763 |
by rmoretti Thu, 2016-02-04 09:29 |
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Using D-amino acids in Rosetta docking by moehle » Wed, 2011-06-01 00:49 |
7 |
7,650 |
by moehle Mon, 2014-04-21 06:47 |
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Reproducing Rosetta++ scoring function with Rosetta 3? by JuliusSu » Mon, 2014-03-17 21:15 |
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6,316 |
by JuliusSu Wed, 2014-03-19 20:38 |
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Antibody homology modeling fails after blastp by sunhwan » Sat, 2017-02-18 11:25 |
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5,087 |
by sunhwan Mon, 2017-02-27 11:02 |
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rerun same experiment on MPI. by exchhattu » Tue, 2010-02-23 21:14 |
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6,161 |
by exchhattu Mon, 2014-04-21 06:47 |
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How does one prevent Rosetta from connecting two separate chains? by jhbrown » Thu, 2011-12-15 14:08 |
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6,099 |
by Anonymous Mon, 2014-04-21 06:47 |
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General Protein Folding Question by twopint23oz » Sun, 2012-04-01 22:57 |
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5,658 |
by smlewis Mon, 2014-04-21 06:47 |
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AbinitioRelax using multiple cores on a single machine without mpi? by JoG » Tue, 2011-10-25 00:40 |
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10,648 |
by smlewis Mon, 2014-04-21 06:47 |
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how to transfer the rosetta score to physical unit? by Lindsay » Thu, 2012-06-28 09:33 |
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7,058 |
by Lindsay Mon, 2014-04-21 06:47 |
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relax structure before design? by Lindsay » Tue, 2013-11-05 20:50 |
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8,818 |
by rmoretti Mon, 2014-04-21 06:48 |
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Error when renumbering PDB by dzhao » Wed, 2012-07-18 01:03 |
7 |
8,362 |
by rmoretti Mon, 2014-04-21 06:47 |
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hydrophobicity patch by Lindsay » Fri, 2012-05-04 08:24 |
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7,987 |
by Lindsay Mon, 2014-04-21 06:47 |
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Rosetta (antibody_designer) performance by Kihang _Youn » Wed, 2022-03-02 00:48 |
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1,374 |
by Kihang _Youn Thu, 2022-03-10 16:30 |
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How to input constraints? by violetsha7 » Wed, 2009-05-13 00:13 |
7 |
8,186 |
by smlewis Mon, 2014-04-21 06:47 |
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