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Rosetta 3 - General
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how to transfer the rosetta score to physical unit? by Lindsay » Thu, 2012-06-28 09:33 |
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6,369 |
by Lindsay Mon, 2014-04-21 06:47 |
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relax structure before design? by Lindsay » Tue, 2013-11-05 20:50 |
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8,069 |
by rmoretti Mon, 2014-04-21 06:48 |
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Error when renumbering PDB by dzhao » Wed, 2012-07-18 01:03 |
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7,588 |
by rmoretti Mon, 2014-04-21 06:47 |
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hydrophobicity patch by Lindsay » Fri, 2012-05-04 08:24 |
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7,179 |
by Lindsay Mon, 2014-04-21 06:47 |
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Rosetta (antibody_designer) performance by Kihang _Youn » Wed, 2022-03-02 00:48 |
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378 |
by Kihang _Youn Thu, 2022-03-10 16:30 |
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errors while running rosetta 3.1 by isengupta13 » Tue, 2011-05-17 18:11 |
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6,409 |
by jurkm Mon, 2014-04-21 06:47 |
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ERROR READING PDB FILE by asmi » Sat, 2011-02-26 07:23 |
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7,055 |
by smlewis Mon, 2014-04-21 06:47 |
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cutpoint error! by monos_morpheus » Thu, 2011-04-07 08:04 |
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6,050 |
by monos_morpheus Mon, 2014-04-21 06:47 |
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rerun same experiment on MPI. by exchhattu » Tue, 2010-02-23 21:14 |
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5,633 |
by exchhattu Mon, 2014-04-21 06:47 |
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how to optimize the weights? by Lindsay » Tue, 2012-04-10 07:40 |
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4,867 |
by rmoretti Mon, 2014-04-21 06:47 |
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Rosetta3.3 enzyme_design errors by jtmacd » Wed, 2012-01-25 03:33 |
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6,518 |
by rmoretti Mon, 2014-04-21 06:47 |
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Help with get_pdb.py for PDB file cleaning by lzx32 » Mon, 2011-03-28 02:11 |
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7,547 |
by smlewis Mon, 2014-04-21 06:47 |
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Talaris score function by nawsad » Tue, 2013-05-21 03:32 |
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7,181 |
by rmoretti Mon, 2014-04-21 06:47 |
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Structure refinement guided by Cryo-EM density maps by ahmadkhalifa » Thu, 2018-03-08 08:22 |
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4,843 |
by ahmadkhalifa Tue, 2018-05-01 09:04 |
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Error running Abinitio relax with @flags by samuelrpita » Mon, 2015-10-05 13:20 |
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6,220 |
by rmoretti Tue, 2015-10-27 09:11 |
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Docking + Active Site Design by bharat_46010 » Sat, 2014-12-13 23:04 |
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6,693 |
by rmoretti Wed, 2015-01-21 08:43 |
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Rosetta3 Tutorials Beta Release by smlewis » Fri, 2011-08-19 13:35 |
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6,164 |
by smlewis Mon, 2014-04-21 06:47 |
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Loop Modeling Deletes Residues by Julix » Wed, 2012-09-05 10:14 |
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5,410 |
by smlewis Mon, 2014-04-21 06:47 |
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How to input constraints? by violetsha7 » Wed, 2009-05-13 00:13 |
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7,453 |
by smlewis Mon, 2014-04-21 06:47 |
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log files by shadrinams » Fri, 2018-01-26 07:29 |
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4,858 |
by shadrinams Mon, 2018-02-12 11:47 |
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Is the packer aware of non canonical amino acids? by krdav » Tue, 2016-08-16 08:16 |
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4,901 |
by krdav Wed, 2016-08-17 12:57 |
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about Residue Number in Rosetta by jiongzhang » Mon, 2012-06-11 14:58 |
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8,565 |
by smlewis Mon, 2014-04-21 06:47 |
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How to deal with Cu-as a ligand or as part of the receptor? by hanypao » Fri, 2011-09-30 18:50 |
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8,580 |
by rmoretti Mon, 2014-04-21 06:47 |
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best_ifaceE.py error by rosa » Fri, 2013-07-12 08:35 |
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5,165 |
by rosa Mon, 2014-04-21 06:48 |
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A question about Multiple constraints by kxiao » Mon, 2014-06-16 07:02 |
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5,609 |
by masterofpuppets Fri, 2014-12-19 08:30 |
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Question on eval_atom_derivative function. by Al52 » Thu, 2015-12-03 16:17 |
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5,070 |
by rmoretti Thu, 2016-02-04 09:29 |
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Using D-amino acids in Rosetta docking by moehle » Wed, 2011-06-01 00:49 |
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7,070 |
by moehle Mon, 2014-04-21 06:47 |
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Reproducing Rosetta++ scoring function with Rosetta 3? by JuliusSu » Mon, 2014-03-17 21:15 |
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5,666 |
by JuliusSu Wed, 2014-03-19 20:38 |
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Antibody homology modeling fails after blastp by sunhwan » Sat, 2017-02-18 11:25 |
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4,425 |
by sunhwan Mon, 2017-02-27 11:02 |
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How does one prevent Rosetta from connecting two separate chains? by jhbrown » Thu, 2011-12-15 14:08 |
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5,553 |
by Anonymous Mon, 2014-04-21 06:47 |
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General Protein Folding Question by twopint23oz » Sun, 2012-04-01 22:57 |
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5,137 |
by smlewis Mon, 2014-04-21 06:47 |
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AbinitioRelax using multiple cores on a single machine without mpi? by JoG » Tue, 2011-10-25 00:40 |
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9,649 |
by smlewis Mon, 2014-04-21 06:47 |
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ETABLE constraint function type by allan.ferrari » Tue, 2017-01-10 08:01 |
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4,539 |
by smlewis Sun, 2017-01-15 18:14 |
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talaris2013 energy terms modifications by peony » Sat, 2013-11-23 02:48 |
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13,154 |
by rmoretti Mon, 2014-04-21 06:48 |
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RosettaVIP by nick.polizzi » Tue, 2013-08-06 15:13 |
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5,808 |
by rmoretti Mon, 2014-04-21 06:48 |
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Every thing Ok in PC end Error on Server by jrcf » Tue, 2016-03-22 07:21 |
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5,918 |
by jrcf Wed, 2016-03-23 12:16 |
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using constraints with AbinitioRelax (Rosetta 3.1) by ndousis » Fri, 2009-12-18 08:56 |
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6,777 |
by ndousis Mon, 2014-04-21 06:47 |
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Rosetta3 Tutorials by smlewis » Fri, 2011-11-18 07:33 |
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14,999 |
by rmoretti Tue, 2019-07-09 10:24 |
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Rosetta job distribution error by ss » Thu, 2019-08-01 09:26 |
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3,402 |
by ac.research Mon, 2020-02-10 08:19 |
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Debugging Rosetta under XCode by sacch » Sun, 2011-10-16 18:23 |
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6,476 |
by sacch Mon, 2014-04-21 06:47 |
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Looking for a pdb.... by MarkW » Mon, 2014-10-13 15:45 |
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6,425 |
by rmoretti Mon, 2014-11-03 16:30 |
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memory issue rosetta3.4 scripts by ast » Mon, 2013-01-28 06:25 |
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7,808 |
by smlewis Mon, 2014-04-21 06:47 |
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kinematic loop modeling/sequence design keeps crashing with segmentation fault by banshee » Thu, 2013-03-28 09:52 |
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6,587 |
by smlewis Mon, 2014-04-21 06:47 |
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Submitting job to local cluster by tusharranjanmoharana » Fri, 2016-04-15 01:38 |
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7,604 |
by rmoretti Mon, 2016-05-09 09:23 |
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loop remodelling with a fixed bound DNA by jtmacd » Thu, 2010-02-25 03:23 |
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5,018 |
by jtmacd Mon, 2014-04-21 06:47 |
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how to design binding interface? by Lindsay » Mon, 2013-12-02 19:06 |
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8,626 |
by rmoretti Tue, 2019-07-09 12:50 |
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Error with non-canonical amino acid in SnugDock. by sk0319 » Thu, 2016-12-29 16:12 |
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5,360 |
by sk0319 Wed, 2017-01-11 10:52 |
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building a 77 aa long protein fragment by tevang » Sat, 2010-02-20 11:37 |
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5,914 |
by gsmurphy Mon, 2014-04-21 06:47 |
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Problems with Cterm_amidation.txt by helenah » Thu, 2020-10-08 04:52 |
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2,576 |
by helenah Tue, 2020-11-03 04:33 |
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Resfile by vijayaraj81 » Thu, 2014-02-27 01:14 |
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6,793 |
by vijayaraj81 Tue, 2014-03-04 05:07 |
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Clustering using an disrupted run silent file by PaulaBanks » Mon, 2013-07-15 02:19 |
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6,508 |
by rmoretti Wed, 2014-09-24 09:57 |
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input_score_filter not taken by program cluster ? by Anonymous » Mon, 2012-06-11 09:14 |
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7,143 |
by attesor Fri, 2014-10-31 04:49 |
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Loop Modeling with fixed backbone by bharat_46010 » Mon, 2011-12-19 05:20 |
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6,907 |
by bharat_46010 Mon, 2014-04-21 06:47 |
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is it possible to generate models without hydrogen? by albumns » Fri, 2012-03-02 12:24 |
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6,615 |
by albumns Mon, 2014-04-21 06:47 |
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How to calculate the binding energy of peptide and a protein? by tianbu » Thu, 2014-02-13 20:44 |
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8,904 |
by tianbu Mon, 2014-02-17 03:36 |
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Problems with "pdb_renumber.py" in tutorial Advanced Protein-Protein Docking by Sunyp_IM » Sun, 2017-06-25 02:40 |
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5,955 |
by ac.research Mon, 2018-05-14 10:20 |
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How to get multiple chains in PDB from Fold and Dock by arthuc01 » Tue, 2012-05-29 02:05 |
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7,394 |
by arthuc01 Mon, 2014-04-21 06:47 |
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energy minimization of loop only by jtmacd » Wed, 2011-01-12 07:09 |
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8,475 |
by lanselibai Wed, 2014-10-15 01:41 |
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Re: Protein-RNA interface design by bharat_46010 » Tue, 2015-04-07 04:44 |
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6,954 |
by rmoretti Mon, 2015-06-01 15:27 |
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Rosetta reference energy by Lindsay » Mon, 2012-05-07 07:56 |
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7,466 |
by Lindsay Mon, 2014-04-21 06:47 |
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MPI stall by jadolfbr » Thu, 2013-10-10 18:59 |
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8,344 |
by jadolfbr Mon, 2014-04-21 06:48 |
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Change in binding energy after mutation in interface? by cossio » Mon, 2014-12-01 06:27 |
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8,999 |
by rmoretti Thu, 2015-04-30 16:25 |
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flexible backbone design (fixbb+relax) by sdh_h » Mon, 2013-02-04 03:19 |
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9,273 |
by gsmurphy Mon, 2014-04-21 06:47 |
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Running a ReportFSC mover between two .mrc maps by ahmadkhalifa » Mon, 2018-03-12 07:52 |
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4,096 |
by brandon.frenz Tue, 2018-03-20 10:28 |
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Can Fold-and-dock protocol applied to membrane proteins by justin » Thu, 2011-07-21 00:14 |
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7,371 |
by wangyr Mon, 2014-04-21 06:47 |
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AbinitioRelax with very small peptides by jamsmad » Tue, 2012-09-04 13:45 |
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7,456 |
by jamsmad Mon, 2014-04-21 06:47 |
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ERROR: Unused "free" argument specified: GDP.fa.tors by ahmadkhalifa » Fri, 2018-06-15 11:27 |
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5,360 |
by smlewis Tue, 2018-06-19 09:28 |
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what is "-relax:sequence" ? by Anonymous » Fri, 2012-06-08 06:31 |
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7,083 |
by smlewis Mon, 2014-04-21 06:47 |
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Does the fold count reset if abinitio is restarted? by burkheadlab » Mon, 2011-06-13 11:39 |
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7,550 |
by rmoretti Thu, 2017-02-02 08:32 |
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How do you implement phosphoserine in ab -initio folding? by smiruthi » Fri, 2011-12-16 14:45 |
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7,801 |
by brspurri Mon, 2014-04-21 06:47 |
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pNNMAKE compilation by adva » Sun, 2012-12-02 03:59 |
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6,698 |
by smlewis Mon, 2014-04-21 06:47 |
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Remote access to Rosetta on Blue Gene or another HPC system? by rfieldhouse » Mon, 2011-05-16 08:40 |
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7,524 |
by rfieldhouse Mon, 2014-04-21 06:47 |
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error during docking by zhisheng » Thu, 2012-02-02 12:10 |
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7,404 |
by smlewis Mon, 2014-04-21 06:47 |
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Using Degenerate Protons in Rosetta3.x by jurkm » Wed, 2011-06-08 03:25 |
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9,017 |
by jurkm Mon, 2014-04-21 06:47 |
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Relax Refinement for complecated targets by jiongzhang » Fri, 2012-01-20 09:57 |
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6,277 |
by jiongzhang Mon, 2014-04-21 06:47 |
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latest version of rosetta--unable to build models by pramod » Mon, 2014-11-03 11:40 |
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8,395 |
by jadolfbr Wed, 2014-11-26 11:40 |
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disulfide bonds using abinitio folding module by crfenollar » Wed, 2010-02-24 03:26 |
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10,776 |
by lanselibai Tue, 2015-02-10 14:03 |
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Modeling of a Multi-Domain Dimer by jurkm » Mon, 2011-08-29 01:39 |
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8,728 |
by jurkm Mon, 2014-04-21 06:47 |
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CryoEM model refinement with covalent conjugated prosthetic Phosphopantetheine carrying acyl group by ZhijunW » Thu, 2020-09-03 18:36 |
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3,296 |
by matteoferla Sat, 2020-09-12 03:02 |
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AB INITIO WITH METALLOPROTEIN by kaue » Sun, 2012-06-17 14:04 |
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10,117 |
by masterofpuppets Tue, 2015-02-10 01:33 |
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Histidine protonation by DmitriiN » Mon, 2016-09-26 13:15 |
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13,607 |
by rmoretti Mon, 2018-01-15 15:37 |
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type of docking by rohi » Mon, 2020-07-06 06:55 |
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3,984 |
by rohi Sun, 2020-07-26 17:03 |
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How to do ab initio with fixed part of protein by eunwook » Tue, 2013-04-16 03:00 |
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9,607 |
by rmoretti Mon, 2014-04-21 06:47 |
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Constraints in Loop Modeling by Julix » Wed, 2012-12-05 07:08 |
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8,346 |
by rmoretti Mon, 2014-04-21 06:47 |
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fragment-based loop modeling to get a helix at the loop site by berk » Wed, 2013-05-29 06:00 |
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7,808 |
by rmoretti Mon, 2014-04-21 06:47 |
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how to design a protein complex by Lindsay » Tue, 2013-11-05 20:24 |
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10,088 |
by Lindsay Mon, 2014-04-21 06:48 |
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How to obtain alignment file for comparative modeling under Rosetta 3.1? by lennylv » Tue, 2010-05-25 01:29 |
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14,531 |
by sabine Mon, 2014-04-21 06:47 |
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Rosetta 3.1 compile error, Linux 32 bit by viochemist » Thu, 2010-07-29 08:40 |
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9,996 |
by smlewis Mon, 2014-04-21 06:47 |
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InterfaceAnalyzer packstat score = 0.000 by vmc99 » Fri, 2018-11-16 11:30 |
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5,474 |
by SenyorDrew Wed, 2019-06-12 14:10 |
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Error when running prepack of PLEXPEPDOCKING by phanvy » Wed, 2014-06-18 07:11 |
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8,548 |
by G Mustafa Fri, 2021-09-10 08:20 |
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Is it possible to do Abinitio folding from a linear structure.? by monos_morpheus » Sat, 2011-04-16 09:13 |
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7,556 |
by monos_morpheus Mon, 2014-04-21 06:47 |
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What is the general protocol for antibody-antigen docking without the native antibody-antigen structures? by Sunyp_IM » Sun, 2017-08-13 05:42 |
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5,844 |
by smlewis Tue, 2017-08-29 08:56 |
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-dock_pert problem by mahajanr » Mon, 2010-07-19 15:45 |
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8,434 |
by weitzner Mon, 2014-04-21 06:47 |
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Anyone here knows what is the protocol capture archive???????!! by MajorID » Thu, 2011-06-02 01:50 |
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9,686 |
by rmoretti Fri, 2015-04-24 12:15 |
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I'm a total beginner to Rosetta 3.2 and there are no tutorials for me to follow. Can someone help.? =) by monos_morpheus » Wed, 2011-02-02 08:11 |
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8,801 |
by monos_morpheus Mon, 2014-04-21 06:47 |
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B1_SampleSegment1.sh from RosettaES tutorial crashes by ab » Tue, 2017-07-04 08:42 |
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6,635 |
by brandon.frenz Sat, 2017-07-08 13:49 |
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covalent ligand docking in Rosetta by rohi » Mon, 2021-06-07 06:39 |
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2,746 |
by matteoferla Wed, 2021-07-14 04:03 |
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make_fragment.pl Error! by Apiwat » Sat, 2014-02-15 13:35 |
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11,129 |
by Apiwat Tue, 2014-03-11 09:42 |
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Why are all source codes .gz and not .tgz by jasnyderjr » Tue, 2016-12-20 21:23 |
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7,305 |
by smlewis Thu, 2016-12-22 13:11 |
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Docking an iron atom to a peptide by buzb » Wed, 2011-01-26 09:49 |
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11,377 |
by smlewis Mon, 2014-04-21 06:47 |
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