You are here
Rosetta 3 - General
Log in to post new content in the forum.
| Topic / Topic starter |
Replies |
Views | Last post | |
|---|---|---|---|---|
|
dun10 by jadolfbr » Thu, 2012-01-19 12:16 |
5 |
5,140 |
by jadolfbr Mon, 2014-04-21 06:47 |
|
|
Modeling only part of the protein structure using ROSETTA by qiongwu » Fri, 2009-05-29 09:08 |
5 |
4,988 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Scoring Electrostatics by aroop » Tue, 2012-08-07 11:41 |
5 |
5,631 |
by aroop Mon, 2014-04-21 06:47 |
|
|
modeling residues with covalent ligand attachments by sid » Fri, 2011-04-15 09:16 |
5 |
7,884 |
by rmoretti Fri, 2015-07-03 14:02 |
|
|
Rosetta Antibody Prepack - Problem HL_A vs. LH_A by cannond » Fri, 2017-03-03 02:41 |
5 |
5,480 |
by cannond Wed, 2017-03-08 03:00 |
|
|
questions about ab init membrane protein by albumns » Mon, 2011-02-07 01:09 |
5 |
5,421 |
by zeynep Mon, 2014-04-21 06:47 |
|
|
calculate RMSD (RNA modelling) by obdulia » Tue, 2016-07-05 01:58 |
5 |
6,104 |
by obdulia Wed, 2016-07-13 09:11 |
|
|
Loop modeling with ligand in the receptor by cno » Mon, 2010-12-13 14:07 |
5 |
6,458 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
protocols.jd2.JobDistributor: [ ERROR ] by johnnytam100 » Thu, 2019-04-11 09:30 |
5 |
4,807 |
by jadolfbr Tue, 2019-04-16 09:15 |
|
|
uninstalling or rebuilding rosetta by rlwoltz » Thu, 2013-04-11 11:45 |
5 |
7,879 |
by rlwoltz Mon, 2014-04-21 06:47 |
|
|
setting timeout option in MPI run by syntekabio2019 » Mon, 2024-02-26 01:09 |
5 |
381 |
by rmoretti Wed, 2024-02-28 09:20 |
|
|
ab inito memberane error by albumns » Mon, 2011-02-14 10:58 |
5 |
8,109 |
by albumns Mon, 2014-04-21 06:47 |
|
|
ClusterApp hogs way too much memory... by IgaK » Tue, 2009-09-29 00:14 |
5 |
5,008 |
by w107kdk Mon, 2014-04-21 06:47 |
|
|
Resfile for fixed backbone design by dyq » Wed, 2009-10-07 10:50 |
5 |
5,346 |
by attesor Mon, 2014-04-21 06:47 |
|
|
Relax protocoll short pdb of AAA petide by knutjbj » Wed, 2011-01-26 05:01 |
5 |
5,021 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
About align hundreds of pdb structures produced by rosseta membrane abinitio by ritacc18 » Wed, 2013-05-22 12:37 |
5 |
6,717 |
by ssrb Tue, 2015-09-22 08:35 |
|
|
RosettaDock decoys recoring with ZRANK by cheyuk » Fri, 2014-04-11 01:40 |
5 |
8,001 |
by rmoretti Thu, 2016-04-28 15:53 |
|
|
De novo Protein Design by ac.research » Sat, 2017-07-15 10:39 |
5 |
8,598 |
by rmoretti Mon, 2017-08-14 09:06 |
|
|
Reading FE from 2PAH by jadolfbr » Tue, 2013-01-29 16:10 |
5 |
6,460 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
extraction of pdbs from silent.out files on Mac by pramod » Tue, 2014-01-07 11:43 |
5 |
7,385 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
combine_silent ERROR: unknown atom_name: CYS SG by freedman » Mon, 2017-03-06 10:56 |
5 |
4,387 |
by freedman Mon, 2017-03-06 13:24 |
|
|
cluster pdb structures questions by ritacc18 » Thu, 2013-03-28 19:20 |
5 |
7,173 |
by ritacc18 Mon, 2014-04-21 06:47 |
|
|
Computing energy gradients for side chain minimization by pachecoj » Wed, 2017-03-29 08:03 |
5 |
4,739 |
by pachecoj Wed, 2017-03-29 12:32 |
|
|
Question regarding buried or exposed residues by qlj » Fri, 2012-11-09 23:43 |
5 |
6,595 |
by qlj Mon, 2014-04-21 06:47 |
|
|
loop modelling/Rosetta 3.4, 3.5 by berk » Tue, 2013-07-02 08:38 |
5 |
5,945 |
by MRH Mon, 2014-04-21 06:48 |
|
|
low resolution blind protein-protein docking with a ligand by einew » Sun, 2011-03-20 13:59 |
5 |
5,956 |
by einew Mon, 2014-04-21 06:47 |
|
|
pro_closure energy scoring function by peony » Sat, 2013-11-16 13:22 |
5 |
6,072 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
Docking tree issues by salvatta » Tue, 2018-07-17 05:57 |
5 |
5,079 |
by salvatta Mon, 2018-09-10 10:04 |
|
|
how to use AbinitioRelax.mpi.linuxgccrelease? by albumns » Mon, 2012-03-26 22:50 |
5 |
6,704 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Error when using RabD with a nanobody. by zhangying1990 » Mon, 2018-12-17 04:40 |
5 |
4,142 |
by jadolfbr Mon, 2019-01-28 08:46 |
|
|
Make_fragments.pl database by TiagoGomes » Tue, 2009-10-13 11:31 |
5 |
4,759 |
by matteoferla Wed, 2021-09-29 01:58 |
|
|
loop modelling error on Rosetta3.2 or Rosetta3.3 by exchhattu » Thu, 2011-09-29 03:58 |
5 |
5,183 |
by rpache Mon, 2014-04-21 06:47 |
|
|
de novo RNA loop by c.ocasion » Sun, 2021-02-14 18:34 |
5 |
2,841 |
by everyday847 Mon, 2021-03-29 20:19 |
|
|
Access sigma values for rotamers by pachecoj » Thu, 2014-05-15 07:10 |
5 |
5,542 |
by rmoretti Sat, 2014-05-17 14:10 |
|
|
Chain specific flags by helenah » Mon, 2020-10-19 03:31 |
5 |
3,095 |
by rmoretti Fri, 2020-11-06 08:04 |
|
|
rosetta_scripts_BOGUS coords warning message by Karol » Tue, 2016-12-13 02:35 |
5 |
5,609 |
by Karol Thu, 2016-12-15 01:35 |
|
|
Problem with undetected lower and upper terminus variants for new polymer by Martin Floor » Sat, 2022-06-11 06:51 |
5 |
2,105 |
by matteoferla Fri, 2022-07-01 13:49 |
|
|
Abinitio Calculations - typical parameters by vamsi » Thu, 2010-11-11 07:06 |
5 |
6,007 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
match_dspos1 and other matcher options by petrikigor » Sat, 2012-10-20 09:22 |
5 |
5,614 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
Problems with disulphide bonds during KIC by Loki01 » Tue, 2017-11-28 03:11 |
5 |
4,465 |
by Loki01 Thu, 2017-12-14 06:20 |
|
|
Rotate MOVER by gw » Wed, 2012-08-15 12:09 |
5 |
5,350 |
by glemmon Mon, 2014-04-21 06:47 |
|
|
protein binding energy problem by Lindsay » Thu, 2014-04-17 23:10 |
5 |
5,913 |
by jadolfbr Mon, 2014-04-21 07:30 |
|
|
Error when running "plot_LHOC.py" by Sunyp_IM » Sun, 2017-08-13 05:54 |
5 |
4,378 |
by smlewis Wed, 2017-08-16 08:30 |
|
|
P-P docking with ambiguous constraints by Anouk » Fri, 2013-11-08 11:38 |
5 |
6,714 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
Rotamer Library Generation in Rosetta3 by jcminerlanl » Wed, 2016-11-30 07:34 |
5 |
6,014 |
by rmoretti Tue, 2021-02-09 11:52 |
|
|
BridgeChainsMover by msardejani » Sun, 2016-08-07 17:32 |
5 |
5,098 |
by smlewis Tue, 2016-08-30 13:47 |
|
|
Rosetta-foldtree and docking by tingting » Tue, 2022-03-15 22:49 |
5 |
2,187 |
by aastha.pal Mon, 2022-06-27 09:55 |
|
|
Relax command for docking purposes and cluster_vs_rmsd command by Rkfoury » Wed, 2015-04-01 08:48 |
5 |
5,727 |
by rmoretti Sat, 2015-04-25 10:05 |
|
|
ignore loops on threading by fred » Tue, 2014-11-11 11:33 |
5 |
5,267 |
by rmoretti Tue, 2014-11-18 10:01 |
|
|
Typical relax options not applied in relax.mpi.linuxiccrelease?? by David Weis » Mon, 2017-02-27 11:35 |
5 |
4,847 |
by rmoretti Thu, 2017-08-03 09:01 |
|
|
Using 2 non-standard residues in one run by einew » Tue, 2011-03-08 21:24 |
5 |
6,642 |
by einew Mon, 2014-04-21 06:47 |
|
|
comparison of energy by sdh » Mon, 2010-08-16 07:55 |
5 |
5,584 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Evaluating energies on non-standard rotamer set by pachecoj » Sat, 2014-07-26 16:27 |
5 |
5,014 |
by pachecoj Sat, 2014-08-09 06:33 |
|
|
Efficient implementation of MPI with protein design programs by zachdebruine » Thu, 2018-06-28 10:41 |
5 |
4,591 |
by smlewis Tue, 2018-07-03 11:22 |
|
|
Secondary Structure Relax by ac.research » Sat, 2018-03-17 10:50 |
5 |
4,758 |
by smlewis Wed, 2018-03-21 08:42 |
|
|
RosettaMatch by jtmacd » Wed, 2012-01-11 06:50 |
5 |
10,174 |
by jtmacd Mon, 2014-04-21 06:47 |
|
|
Suppress printing to STDOUT for applications by tylerborrman » Tue, 2015-11-24 11:37 |
5 |
5,644 |
by code_Monkey Thu, 2021-03-18 08:03 |
|
|
P(Res | phi,psi ) by jadolfbr » Thu, 2011-07-21 08:49 |
5 |
4,940 |
by jadolfbr Mon, 2014-04-21 06:47 |
|
|
industrial example of ROSETTA modeled protein by banshee » Sat, 2016-04-23 23:40 |
5 |
5,252 |
by banshee Tue, 2016-04-26 00:47 |
|
|
Problem with relaxing a PDB around a chemically bound ligand by drinker615 » Sat, 2024-04-06 16:04 |
5 |
211 |
by drinker615 Tue, 2024-04-16 19:06 |
|
|
How to extract specific pdb from silent files by eunwook » Tue, 2013-05-14 05:29 |
5 |
15,715 |
by nawsad Mon, 2014-04-21 06:47 |
|
|
nr.fasta by silvia » Wed, 2013-01-23 10:08 |
5 |
10,630 |
by dgront Mon, 2014-04-21 06:47 |
|
|
scoring models by peony » Fri, 2013-12-06 02:45 |
5 |
5,928 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
Minimization Issue: Coarse Graining to All atom modeling by abolia » Tue, 2015-04-28 10:52 |
5 |
5,539 |
by rmoretti Tue, 2015-05-05 14:31 |
|
|
Cannot use SimpleMetrics by Vedasheersh » Sun, 2018-06-10 23:38 |
5 |
3,978 |
by smlewis Tue, 2018-06-12 10:54 |
|
|
demos/public/ideal_proteins Segmentation fault by coomteng@gmail.com » Wed, 2018-03-07 00:15 |
5 |
4,113 |
by rmoretti Thu, 2018-03-08 07:46 |
|
|
Error running snugdock by SenyorDrew » Tue, 2017-03-14 10:00 |
5 |
4,844 |
by SenyorDrew Wed, 2017-03-29 06:40 |
|
|
Robetta fragments and silent.out-file by masterofpuppets » Wed, 2015-01-07 04:28 |
5 |
6,446 |
by masterofpuppets Tue, 2015-02-10 03:15 |
|
|
Rosetta repacking output by doranhen » Mon, 2012-12-03 03:44 |
5 |
5,994 |
by doranhen Mon, 2014-04-21 06:47 |
|
|
Interface rmsd calculation Irms by mahajanr » Wed, 2010-07-07 18:24 |
5 |
7,879 |
by mahajanr Mon, 2014-04-21 06:47 |
|
|
Docking double-stranded DNA to a protein by xpzhang » Tue, 2012-01-31 12:35 |
5 |
8,879 |
by xpzhang Mon, 2014-04-21 06:47 |
|
|
Is cis-Glycine okay? by matteoferla » Tue, 2019-11-19 07:26 |
5 |
3,660 |
by matteoferla Wed, 2019-11-20 02:32 |
|
|
Unrecognized residue Glc by cgautier » Tue, 2015-03-31 02:20 |
5 |
6,433 |
by rmoretti Thu, 2015-04-16 10:09 |
|
|
Encouraging better packing in enzyme_design by linucks » Thu, 2018-03-01 07:05 |
5 |
5,832 |
by linucks Wed, 2018-04-25 08:50 |
|
|
Produces a set of rotamers from a given residue by a-eatemadi@razi... » Tue, 2017-08-15 08:05 |
5 |
5,414 |
by a-eatemadi@razi... Fri, 2017-09-15 07:45 |
|
|
RosettaHoles by ge0rgekh0ury » Mon, 2012-01-09 09:01 |
6 |
6,236 |
by Anonymous Mon, 2014-04-21 06:47 |
|
|
How to run Rosetta3 in parallel by lennylv » Mon, 2009-03-30 04:21 |
6 |
9,861 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
Fixed bb design with hydrogen bond constraint by bharat_46010 » Mon, 2012-04-30 22:56 |
6 |
6,000 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
How to define specific residues in alascan ? by Park » Mon, 2011-06-13 19:56 |
6 |
7,152 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
side-chain refinement by qlj » Wed, 2013-02-20 04:40 |
6 |
8,790 |
by qlj Mon, 2014-04-21 06:47 |
|
|
Error_fragment_generation by Payal Chatterjee » Fri, 2016-02-12 12:11 |
6 |
6,776 |
by G Mustafa Fri, 2021-09-10 01:16 |
|
|
calculated ddG_bind converges to zero by fukamitka » Mon, 2013-06-24 20:32 |
6 |
6,105 |
by fukamitka Mon, 2014-04-21 06:48 |
|
|
Public subversion / Enzyme design public app by weallen » Tue, 2009-08-11 20:50 |
6 |
5,553 |
by weallen Mon, 2014-04-21 06:47 |
|
|
Give preference to native residue during fixed backbone designing by tusharranjanmoharana » Mon, 2016-04-04 12:43 |
6 |
5,748 |
by rmoretti Thu, 2016-04-28 15:19 |
|
|
Memory leak when PDB preparation by Jacky010 » Mon, 2019-05-06 01:28 |
6 |
4,347 |
by Jacky010 Tue, 2019-05-14 01:24 |
|
|
AbinitioRelax under different directories without -constant_seed -jran flag by xpzhang » Wed, 2010-09-15 14:56 |
6 |
7,668 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
Problem with clustering 1000 centroid pdbs by doranhen » Sat, 2012-04-28 10:34 |
6 |
6,630 |
by doranhen Mon, 2014-04-21 06:47 |
|
|
How do I add hydrogen atoms to my PDB file? by monos_morpheus » Wed, 2011-03-30 03:30 |
6 |
13,793 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
This element is not expected. by ac.research » Fri, 2017-10-13 03:47 |
6 |
7,462 |
by vmulligan Thu, 2020-07-16 23:31 |
|
|
Fe3p Heme Iron Unrecognized Despite Loading Hem Params by vsjasion » Fri, 2011-09-02 10:37 |
6 |
7,653 |
by tigerous Mon, 2014-04-21 06:47 |
|
|
Can i start again the job ? by byin » Thu, 2011-09-15 01:19 |
6 |
5,474 |
by byin Mon, 2014-04-21 06:47 |
|
|
Cannot run binaries after successful compilation by ac.research » Mon, 2017-08-14 02:56 |
6 |
7,322 |
by ac.research Fri, 2017-08-18 00:57 |
|
|
NR Database Download in install_dependencies.pl (for make_fragments.pl) Broken by Jacob_Verburgt » Tue, 2020-03-10 08:58 |
6 |
5,512 |
by Jacob_Verburgt Wed, 2020-03-11 05:18 |
|
|
modeling loops between domains by dhorita » Thu, 2009-03-05 14:48 |
6 |
5,899 |
by jarod Mon, 2014-04-21 06:47 |
|
|
dG_separated threshold for identifying non-binding peptides with InterfaceAnalyzer. by jyotisutar9 » Thu, 2016-12-01 00:39 |
6 |
6,182 |
by jyotisutar9 Wed, 2016-12-14 09:39 |
|
|
How to handle/retain Metals (Zn, Ca) inside the Protein? by aniyaz » Wed, 2023-01-11 03:21 |
6 |
1,671 |
by rmoretti Mon, 2023-02-20 16:07 |
|
|
distances definition in course-grained (centroid mode) steps by allan.ferrari » Tue, 2017-01-03 05:15 |
6 |
5,404 |
by allan.ferrari Tue, 2017-01-03 11:15 |
|
|
I used mpirun/mpiexec and it runs same job 32times by leygkn » Mon, 2020-09-21 00:53 |
6 |
4,291 |
by jadolfbr Thu, 2020-09-24 10:04 |
|
|
What's a good application to thread a sequence over a peptide (of a peptide-protein complex) and minimize? by brspurri » Tue, 2013-02-12 08:19 |
6 |
7,210 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
The design of a helical peptide by Jacob-kong » Tue, 2012-06-26 06:26 |
6 |
8,242 |
by Jacob-kong Mon, 2014-04-21 06:47 |
Log in to post new content in the forum.
