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Rosetta 3 - General

Topic / Topic starter Repliessort descending Views Last post
Normal topic Antibody Homology Modeling - Antibody vs. Antibody_legacy
by cannond » Tue, 2017-02-14 05:53
4
4,374 by cannond
Wed, 2017-03-01 08:05
Normal topic Identical decoys
by aroop » Tue, 2012-09-25 12:50
4
4,858 by smlewis
Mon, 2014-04-21 06:47
Normal topic Seasons greetings with a Christmas tree shaped protein
by matteoferla » Sun, 2019-12-22 03:37
4
3,203 by matteoferla
Mon, 2019-12-23 07:24
Normal topic How to add uncommon metal elements into Rosetta and make it recognizable?
by JasonIsaac » Thu, 2023-02-09 00:08
4
1,375 by JasonIsaac
Sat, 2023-02-11 00:44
Normal topic Repeated entries in silent file
by almeida85 » Fri, 2022-08-05 02:52
4
1,650 by almeida85
Thu, 2022-08-11 00:29
Normal topic Successful installation on OpenSuse11.1 - tests?
by zharmad » Thu, 2010-08-19 00:30
4
4,044 by zharmad
Mon, 2014-04-21 06:47
Normal topic Fluctuations in I_sc
by eminegenetics » Thu, 2018-09-13 12:07
4
3,417 by eminegenetics
Fri, 2018-09-21 07:42
Normal topic short peptide fragment file generation
by cheyuk » Mon, 2016-07-11 00:04
4
4,912 by smlewis
Wed, 2016-07-13 23:41
Normal topic cluster error
by albumns » Thu, 2010-12-16 18:06
4
4,840 by smlewis
Mon, 2014-04-21 06:47
Normal topic Difference between score and silent_score when silent files are combined
by justin » Tue, 2012-01-03 06:44
4
4,594 by justin
Mon, 2014-04-21 06:47
Normal topic Docking tree issues
by salvatta » Tue, 2018-07-17 05:57
5
5,530 by salvatta
Mon, 2018-09-10 10:04
Normal topic how to use AbinitioRelax.mpi.linuxgccrelease?
by albumns » Mon, 2012-03-26 22:50
5
6,922 by smlewis
Mon, 2014-04-21 06:47
Normal topic low resolution blind protein-protein docking with a ligand
by einew » Sun, 2011-03-20 13:59
5
6,153 by einew
Mon, 2014-04-21 06:47
Normal topic pro_closure energy scoring function
by peony » Sat, 2013-11-16 13:22
5
6,334 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Error when using RabD with a nanobody.
by zhangying1990 » Mon, 2018-12-17 04:40
5
4,384 by jadolfbr
Mon, 2019-01-28 08:46
Normal topic Issues with rosetta numbering and keeping ligand when relaxing molecule.
by Wexter300 » Sun, 2024-04-28 14:37
5
699 by rmoretti
Thu, 2024-06-20 13:28
Normal topic Access sigma values for rotamers
by pachecoj » Thu, 2014-05-15 07:10
5
5,769 by rmoretti
Sat, 2014-05-17 14:10
Normal topic loop modelling error on Rosetta3.2 or Rosetta3.3
by exchhattu » Thu, 2011-09-29 03:58
5
5,408 by rpache
Mon, 2014-04-21 06:47
Normal topic de novo RNA loop
by c.ocasion » Sun, 2021-02-14 18:34
5
3,069 by everyday847
Mon, 2021-03-29 20:19
Normal topic Chain specific flags
by helenah » Mon, 2020-10-19 03:31
5
3,334 by rmoretti
Fri, 2020-11-06 08:04
Normal topic rosetta_scripts_BOGUS coords warning message
by Karol » Tue, 2016-12-13 02:35
5
5,896 by Karol
Thu, 2016-12-15 01:35
Normal topic Problem with undetected lower and upper terminus variants for new polymer
by Martin Floor » Sat, 2022-06-11 06:51
5
2,422 by matteoferla
Fri, 2022-07-01 13:49
Normal topic Abinitio Calculations - typical parameters
by vamsi » Thu, 2010-11-11 07:06
5
6,230 by smlewis
Mon, 2014-04-21 06:47
Normal topic match_dspos1 and other matcher options
by petrikigor » Sat, 2012-10-20 09:22
5
5,830 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Problems with disulphide bonds during KIC
by Loki01 » Tue, 2017-11-28 03:11
5
4,692 by Loki01
Thu, 2017-12-14 06:20
Normal topic Rotate MOVER
by gw » Wed, 2012-08-15 12:09
5
5,529 by glemmon
Mon, 2014-04-21 06:47
Normal topic protein binding energy problem
by Lindsay » Thu, 2014-04-17 23:10
5
6,128 by jadolfbr
Mon, 2014-04-21 07:30
Normal topic Error when running "plot_LHOC.py"
by Sunyp_IM » Sun, 2017-08-13 05:54
5
4,606 by smlewis
Wed, 2017-08-16 08:30
Normal topic P-P docking with ambiguous constraints
by Anouk » Fri, 2013-11-08 11:38
5
6,979 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Rotamer Library Generation in Rosetta3
by jcminerlanl » Wed, 2016-11-30 07:34
5
6,353 by rmoretti
Tue, 2021-02-09 11:52
Normal topic BridgeChainsMover
by msardejani » Sun, 2016-08-07 17:32
5
5,302 by smlewis
Tue, 2016-08-30 13:47
Normal topic Modeling only part of the protein structure using ROSETTA
by qiongwu » Fri, 2009-05-29 09:08
5
5,164 by smlewis
Mon, 2014-04-21 06:47
Normal topic ignore loops on threading
by fred » Tue, 2014-11-11 11:33
5
5,512 by rmoretti
Tue, 2014-11-18 10:01
Normal topic Typical relax options not applied in relax.mpi.linuxiccrelease??
by David Weis » Mon, 2017-02-27 11:35
5
5,186 by rmoretti
Thu, 2017-08-03 09:01
Normal topic Rosetta-foldtree and docking
by tingting » Tue, 2022-03-15 22:49
5
2,539 by aastha.pal
Mon, 2022-06-27 09:55
Normal topic Relax command for docking purposes and cluster_vs_rmsd command
by Rkfoury » Wed, 2015-04-01 08:48
5
5,955 by rmoretti
Sat, 2015-04-25 10:05
Normal topic Efficient implementation of MPI with protein design programs
by zachdebruine » Thu, 2018-06-28 10:41
5
4,889 by smlewis
Tue, 2018-07-03 11:22
Normal topic Secondary Structure Relax
by ac.research » Sat, 2018-03-17 10:50
5
5,130 by smlewis
Wed, 2018-03-21 08:42
Normal topic Using 2 non-standard residues in one run
by einew » Tue, 2011-03-08 21:24
5
6,934 by einew
Mon, 2014-04-21 06:47
Normal topic Evaluating energies on non-standard rotamer set
by pachecoj » Sat, 2014-07-26 16:27
5
5,238 by pachecoj
Sat, 2014-08-09 06:33
Normal topic P(Res | phi,psi )
by jadolfbr » Thu, 2011-07-21 08:49
5
5,110 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic RosettaMatch
by jtmacd » Wed, 2012-01-11 06:50
5
10,553 by jtmacd
Mon, 2014-04-21 06:47
Normal topic Suppress printing to STDOUT for applications
by tylerborrman » Tue, 2015-11-24 11:37
5
5,974 by code_Monkey
Thu, 2021-03-18 08:03
Normal topic industrial example of ROSETTA modeled protein
by banshee » Sat, 2016-04-23 23:40
5
5,480 by banshee
Tue, 2016-04-26 00:47
Normal topic Problem with relaxing a PDB around a chemically bound ligand
by drinker615 » Sat, 2024-04-06 16:04
5
742 by drinker615
Tue, 2024-04-16 19:06
Normal topic ClusterApp hogs way too much memory...
by IgaK » Tue, 2009-09-29 00:14
5
5,239 by w107kdk
Mon, 2014-04-21 06:47
Normal topic nr.fasta
by silvia » Wed, 2013-01-23 10:08
5
10,872 by dgront
Mon, 2014-04-21 06:47
Normal topic scoring models
by peony » Fri, 2013-12-06 02:45
5
6,138 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Resfile for fixed backbone design
by dyq » Wed, 2009-10-07 10:50
5
5,558 by attesor
Mon, 2014-04-21 06:47
Normal topic How to extract specific pdb from silent files
by eunwook » Tue, 2013-05-14 05:29
5
16,231 by nawsad
Mon, 2014-04-21 06:47
Normal topic demos/public/ideal_proteins Segmentation fault
by coomteng@gmail.com » Wed, 2018-03-07 00:15
5
4,344 by rmoretti
Thu, 2018-03-08 07:46
Normal topic Minimization Issue: Coarse Graining to All atom modeling
by abolia » Tue, 2015-04-28 10:52
5
5,795 by rmoretti
Tue, 2015-05-05 14:31
Normal topic Cannot use SimpleMetrics
by Vedasheersh » Sun, 2018-06-10 23:38
5
4,229 by smlewis
Tue, 2018-06-12 10:54
Normal topic Error running snugdock
by SenyorDrew » Tue, 2017-03-14 10:00
5
5,095 by SenyorDrew
Wed, 2017-03-29 06:40
Normal topic Robetta fragments and silent.out-file
by masterofpuppets » Wed, 2015-01-07 04:28
5
6,694 by masterofpuppets
Tue, 2015-02-10 03:15
Normal topic Rosetta repacking output
by doranhen » Mon, 2012-12-03 03:44
5
6,191 by doranhen
Mon, 2014-04-21 06:47
Normal topic Is cis-Glycine okay?
by matteoferla » Tue, 2019-11-19 07:26
5
4,039 by matteoferla
Wed, 2019-11-20 02:32
Normal topic Docking double-stranded DNA to a protein
by xpzhang » Tue, 2012-01-31 12:35
5
9,110 by xpzhang
Mon, 2014-04-21 06:47
Normal topic Encouraging better packing in enzyme_design
by linucks » Thu, 2018-03-01 07:05
5
6,169 by linucks
Wed, 2018-04-25 08:50
Normal topic Make_fragments.pl database
by TiagoGomes » Tue, 2009-10-13 11:31
5
5,004 by matteoferla
Wed, 2021-09-29 01:58
Normal topic comparison of energy
by sdh » Mon, 2010-08-16 07:55
5
5,819 by smlewis
Mon, 2014-04-21 06:47
Normal topic Unrecognized residue Glc
by cgautier » Tue, 2015-03-31 02:20
5
6,698 by rmoretti
Thu, 2015-04-16 10:09
Normal topic Produces a set of rotamers from a given residue
by a-eatemadi@razi... » Tue, 2017-08-15 08:05
5
5,701 by a-eatemadi@razi...
Fri, 2017-09-15 07:45
Normal topic segmentation fault when using design_hpatch scoring function
by rbjacob » Mon, 2018-04-09 11:05
5
4,158 by smlewis
Wed, 2018-04-11 11:45
Normal topic defining interface in interface analyzer
by aa20 » Fri, 2013-09-27 11:08
5
7,293 by smlewis
Mon, 2014-04-21 06:48
Normal topic dun10
by jadolfbr » Thu, 2012-01-19 12:16
5
5,356 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic modeling residues with covalent ligand attachments
by sid » Fri, 2011-04-15 09:16
5
8,178 by rmoretti
Fri, 2015-07-03 14:02
Normal topic Rosetta Antibody Prepack - Problem HL_A vs. LH_A
by cannond » Fri, 2017-03-03 02:41
5
5,798 by cannond
Wed, 2017-03-08 03:00
Normal topic Scoring Electrostatics
by aroop » Tue, 2012-08-07 11:41
5
5,868 by aroop
Mon, 2014-04-21 06:47
Normal topic Interface rmsd calculation Irms
by mahajanr » Wed, 2010-07-07 18:24
5
8,149 by mahajanr
Mon, 2014-04-21 06:47
Normal topic questions about ab init membrane protein
by albumns » Mon, 2011-02-07 01:09
5
5,593 by zeynep
Mon, 2014-04-21 06:47
Normal topic calculate RMSD (RNA modelling)
by obdulia » Tue, 2016-07-05 01:58
5
6,437 by obdulia
Wed, 2016-07-13 09:11
Normal topic Loop modeling with ligand in the receptor
by cno » Mon, 2010-12-13 14:07
5
6,664 by smlewis
Mon, 2014-04-21 06:47
Normal topic protocols.jd2.JobDistributor: [ ERROR ]
by johnnytam100 » Thu, 2019-04-11 09:30
5
5,148 by jadolfbr
Tue, 2019-04-16 09:15
Normal topic ab inito memberane error
by albumns » Mon, 2011-02-14 10:58
5
8,344 by albumns
Mon, 2014-04-21 06:47
Normal topic uninstalling or rebuilding rosetta
by rlwoltz » Thu, 2013-04-11 11:45
5
8,139 by rlwoltz
Mon, 2014-04-21 06:47
Normal topic setting timeout option in MPI run
by syntekabio2019 » Mon, 2024-02-26 01:09
5
977 by rmoretti
Wed, 2024-02-28 09:20
Normal topic Reading FE from 2PAH
by jadolfbr » Tue, 2013-01-29 16:10
5
6,684 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Relax protocoll short pdb of AAA petide
by knutjbj » Wed, 2011-01-26 05:01
5
5,234 by smlewis
Mon, 2014-04-21 06:47
Normal topic About align hundreds of pdb structures produced by rosseta membrane abinitio
by ritacc18 » Wed, 2013-05-22 12:37
5
6,978 by ssrb
Tue, 2015-09-22 08:35
Normal topic RosettaDock decoys recoring with ZRANK
by cheyuk » Fri, 2014-04-11 01:40
5
8,330 by rmoretti
Thu, 2016-04-28 15:53
Normal topic De novo Protein Design
by ac.research » Sat, 2017-07-15 10:39
5
9,036 by rmoretti
Mon, 2017-08-14 09:06
Normal topic extraction of pdbs from silent.out files on Mac
by pramod » Tue, 2014-01-07 11:43
5
7,657 by rmoretti
Mon, 2014-04-21 06:48
Normal topic combine_silent ERROR: unknown atom_name: CYS SG
by freedman » Mon, 2017-03-06 10:56
5
4,616 by freedman
Mon, 2017-03-06 13:24
Normal topic loop modelling/Rosetta 3.4, 3.5
by berk » Tue, 2013-07-02 08:38
5
6,154 by MRH
Mon, 2014-04-21 06:48
Normal topic cluster pdb structures questions
by ritacc18 » Thu, 2013-03-28 19:20
5
7,360 by ritacc18
Mon, 2014-04-21 06:47
Normal topic Computing energy gradients for side chain minimization
by pachecoj » Wed, 2017-03-29 08:03
5
4,960 by pachecoj
Wed, 2017-03-29 12:32
Normal topic Question regarding buried or exposed residues
by qlj » Fri, 2012-11-09 23:43
5
6,839 by qlj
Mon, 2014-04-21 06:47
Normal topic How to handle/retain Metals (Zn, Ca) inside the Protein?
by aniyaz » Wed, 2023-01-11 03:21
6
2,051 by rmoretti
Mon, 2023-02-20 16:07
Normal topic dG_separated threshold for identifying non-binding peptides with InterfaceAnalyzer.
by jyotisutar9 » Thu, 2016-12-01 00:39
6
6,576 by jyotisutar9
Wed, 2016-12-14 09:39
Normal topic distances definition in course-grained (centroid mode) steps
by allan.ferrari » Tue, 2017-01-03 05:15
6
5,674 by allan.ferrari
Tue, 2017-01-03 11:15
Normal topic What's a good application to thread a sequence over a peptide (of a peptide-protein complex) and minimize?
by brspurri » Tue, 2013-02-12 08:19
6
7,474 by smlewis
Mon, 2014-04-21 06:47
Normal topic I used mpirun/mpiexec and it runs same job 32times
by leygkn » Mon, 2020-09-21 00:53
6
4,604 by jadolfbr
Thu, 2020-09-24 10:04
Normal topic is it possible to ab initio only a part of a protein?
by albumns » Sun, 2011-02-13 08:10
6
5,235 by albumns
Mon, 2014-04-21 06:47
Normal topic The design of a helical peptide
by Jacob-kong » Tue, 2012-06-26 06:26
6
8,509 by Jacob-kong
Mon, 2014-04-21 06:47
Normal topic Atomic refinement with fixed ligand
by ahmadkhalifa » Tue, 2018-07-24 10:41
6
5,118 by rmoretti
Mon, 2018-08-20 11:45
Normal topic pdb files in Rosetta format
by zhisheng » Mon, 2011-10-31 08:52
6
7,547 by smlewis
Mon, 2014-04-21 06:47
Normal topic Don't want to output the design structure
by Lindsay » Wed, 2012-05-02 08:02
6
5,968 by Anonymous
Mon, 2014-04-21 06:47
Normal topic No score.sc generated after running flexpepdock.
by monos_morpheus » Sun, 2011-04-10 04:06
6
6,448 by robren
Mon, 2014-04-21 06:47
Normal topic Rosetta CM incorrect threading
by ahmadkhalifa » Mon, 2018-08-06 11:09
6
5,522 by rmoretti
Fri, 2018-08-24 11:59
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