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Rosetta 3 - General
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de novo RNA loop by c.ocasion » Sun, 2021-02-14 18:34 |
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2,320 |
by everyday847 Mon, 2021-03-29 20:19 |
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Access sigma values for rotamers by pachecoj » Thu, 2014-05-15 07:10 |
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5,111 |
by rmoretti Sat, 2014-05-17 14:10 |
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Chain specific flags by helenah » Mon, 2020-10-19 03:31 |
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2,589 |
by rmoretti Fri, 2020-11-06 08:04 |
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rosetta_scripts_BOGUS coords warning message by Karol » Tue, 2016-12-13 02:35 |
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5,001 |
by Karol Thu, 2016-12-15 01:35 |
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Problem with undetected lower and upper terminus variants for new polymer by Martin Floor » Sat, 2022-06-11 06:51 |
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1,455 |
by matteoferla Fri, 2022-07-01 13:49 |
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Abinitio Calculations - typical parameters by vamsi » Thu, 2010-11-11 07:06 |
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5,545 |
by smlewis Mon, 2014-04-21 06:47 |
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Rotate MOVER by gw » Wed, 2012-08-15 12:09 |
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4,999 |
by glemmon Mon, 2014-04-21 06:47 |
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protein binding energy problem by Lindsay » Thu, 2014-04-17 23:10 |
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5,444 |
by jadolfbr Mon, 2014-04-21 07:30 |
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Error when running "plot_LHOC.py" by Sunyp_IM » Sun, 2017-08-13 05:54 |
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3,881 |
by smlewis Wed, 2017-08-16 08:30 |
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match_dspos1 and other matcher options by petrikigor » Sat, 2012-10-20 09:22 |
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5,209 |
by rmoretti Mon, 2014-04-21 06:47 |
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Problems with disulphide bonds during KIC by Loki01 » Tue, 2017-11-28 03:11 |
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3,930 |
by Loki01 Thu, 2017-12-14 06:20 |
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Modeling only part of the protein structure using ROSETTA by qiongwu » Fri, 2009-05-29 09:08 |
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4,564 |
by smlewis Mon, 2014-04-21 06:47 |
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P-P docking with ambiguous constraints by Anouk » Fri, 2013-11-08 11:38 |
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6,280 |
by rmoretti Mon, 2014-04-21 06:48 |
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Rotamer Library Generation in Rosetta3 by jcminerlanl » Wed, 2016-11-30 07:34 |
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5,295 |
by rmoretti Tue, 2021-02-09 11:52 |
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BridgeChainsMover by msardejani » Sun, 2016-08-07 17:32 |
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4,597 |
by smlewis Tue, 2016-08-30 13:47 |
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Relax command for docking purposes and cluster_vs_rmsd command by Rkfoury » Wed, 2015-04-01 08:48 |
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5,273 |
by rmoretti Sat, 2015-04-25 10:05 |
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ignore loops on threading by fred » Tue, 2014-11-11 11:33 |
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4,861 |
by rmoretti Tue, 2014-11-18 10:01 |
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Typical relax options not applied in relax.mpi.linuxiccrelease?? by David Weis » Mon, 2017-02-27 11:35 |
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4,380 |
by rmoretti Thu, 2017-08-03 09:01 |
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Rosetta-foldtree and docking by tingting » Tue, 2022-03-15 22:49 |
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1,511 |
by aastha.pal Mon, 2022-06-27 09:55 |
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Evaluating energies on non-standard rotamer set by pachecoj » Sat, 2014-07-26 16:27 |
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4,604 |
by pachecoj Sat, 2014-08-09 06:33 |
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ClusterApp hogs way too much memory... by IgaK » Tue, 2009-09-29 00:14 |
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4,542 |
by w107kdk Mon, 2014-04-21 06:47 |
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Efficient implementation of MPI with protein design programs by zachdebruine » Thu, 2018-06-28 10:41 |
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4,035 |
by smlewis Tue, 2018-07-03 11:22 |
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Secondary Structure Relax by ac.research » Sat, 2018-03-17 10:50 |
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4,141 |
by smlewis Wed, 2018-03-21 08:42 |
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Using 2 non-standard residues in one run by einew » Tue, 2011-03-08 21:24 |
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6,173 |
by einew Mon, 2014-04-21 06:47 |
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Suppress printing to STDOUT for applications by tylerborrman » Tue, 2015-11-24 11:37 |
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5,103 |
by code_Monkey Thu, 2021-03-18 08:03 |
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Resfile for fixed backbone design by dyq » Wed, 2009-10-07 10:50 |
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4,894 |
by attesor Mon, 2014-04-21 06:47 |
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P(Res | phi,psi ) by jadolfbr » Thu, 2011-07-21 08:49 |
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4,570 |
by jadolfbr Mon, 2014-04-21 06:47 |
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RosettaMatch by jtmacd » Wed, 2012-01-11 06:50 |
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9,507 |
by jtmacd Mon, 2014-04-21 06:47 |
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industrial example of ROSETTA modeled protein by banshee » Sat, 2016-04-23 23:40 |
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4,801 |
by banshee Tue, 2016-04-26 00:47 |
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How to extract specific pdb from silent files by eunwook » Tue, 2013-05-14 05:29 |
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14,750 |
by nawsad Mon, 2014-04-21 06:47 |
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nr.fasta by silvia » Wed, 2013-01-23 10:08 |
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10,150 |
by dgront Mon, 2014-04-21 06:47 |
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scoring models by peony » Fri, 2013-12-06 02:45 |
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5,471 |
by rmoretti Mon, 2014-04-21 06:48 |
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Minimization Issue: Coarse Graining to All atom modeling by abolia » Tue, 2015-04-28 10:52 |
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5,023 |
by rmoretti Tue, 2015-05-05 14:31 |
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Cannot use SimpleMetrics by Vedasheersh » Sun, 2018-06-10 23:38 |
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3,511 |
by smlewis Tue, 2018-06-12 10:54 |
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demos/public/ideal_proteins Segmentation fault by coomteng@gmail.com » Wed, 2018-03-07 00:15 |
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3,593 |
by rmoretti Thu, 2018-03-08 07:46 |
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Error running snugdock by SenyorDrew » Tue, 2017-03-14 10:00 |
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4,281 |
by SenyorDrew Wed, 2017-03-29 06:40 |
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Rosetta repacking output by doranhen » Mon, 2012-12-03 03:44 |
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5,591 |
by doranhen Mon, 2014-04-21 06:47 |
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Make_fragments.pl database by TiagoGomes » Tue, 2009-10-13 11:31 |
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4,137 |
by matteoferla Wed, 2021-09-29 01:58 |
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Robetta fragments and silent.out-file by masterofpuppets » Wed, 2015-01-07 04:28 |
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5,977 |
by masterofpuppets Tue, 2015-02-10 03:15 |
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Docking double-stranded DNA to a protein by xpzhang » Tue, 2012-01-31 12:35 |
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8,478 |
by xpzhang Mon, 2014-04-21 06:47 |
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Is cis-Glycine okay? by matteoferla » Tue, 2019-11-19 07:26 |
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3,078 |
by matteoferla Wed, 2019-11-20 02:32 |
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Unrecognized residue Glc by cgautier » Tue, 2015-03-31 02:20 |
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5,907 |
by rmoretti Thu, 2015-04-16 10:09 |
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Encouraging better packing in enzyme_design by linucks » Thu, 2018-03-01 07:05 |
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5,169 |
by linucks Wed, 2018-04-25 08:50 |
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Produces a set of rotamers from a given residue by a-eatemadi@razi... » Tue, 2017-08-15 08:05 |
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4,840 |
by a-eatemadi@razi... Fri, 2017-09-15 07:45 |
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defining interface in interface analyzer by aa20 » Fri, 2013-09-27 11:08 |
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6,501 |
by smlewis Mon, 2014-04-21 06:48 |
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segmentation fault when using design_hpatch scoring function by rbjacob » Mon, 2018-04-09 11:05 |
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3,473 |
by smlewis Wed, 2018-04-11 11:45 |
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dun10 by jadolfbr » Thu, 2012-01-19 12:16 |
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4,800 |
by jadolfbr Mon, 2014-04-21 06:47 |
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Scoring Electrostatics by aroop » Tue, 2012-08-07 11:41 |
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5,185 |
by aroop Mon, 2014-04-21 06:47 |
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modeling residues with covalent ligand attachments by sid » Fri, 2011-04-15 09:16 |
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7,359 |
by rmoretti Fri, 2015-07-03 14:02 |
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Rosetta Antibody Prepack - Problem HL_A vs. LH_A by cannond » Fri, 2017-03-03 02:41 |
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4,873 |
by cannond Wed, 2017-03-08 03:00 |
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calculated ddG_bind converges to zero by fukamitka » Mon, 2013-06-24 20:32 |
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5,603 |
by fukamitka Mon, 2014-04-21 06:48 |
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AbinitioRelax under different directories without -constant_seed -jran flag by xpzhang » Wed, 2010-09-15 14:56 |
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7,181 |
by rmoretti Mon, 2014-04-21 06:47 |
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Problem with clustering 1000 centroid pdbs by doranhen » Sat, 2012-04-28 10:34 |
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6,265 |
by doranhen Mon, 2014-04-21 06:47 |
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Linker problems when building mini by assaff » Mon, 2009-10-12 01:07 |
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5,005 |
by smlewis Mon, 2014-04-21 06:47 |
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Give preference to native residue during fixed backbone designing by tusharranjanmoharana » Mon, 2016-04-04 12:43 |
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5,141 |
by rmoretti Thu, 2016-04-28 15:19 |
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Memory leak when PDB preparation by Jacky010 » Mon, 2019-05-06 01:28 |
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3,739 |
by Jacky010 Tue, 2019-05-14 01:24 |
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SASA packing score in Rosetta 3.1 by enoee » Wed, 2010-07-28 01:45 |
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6,386 |
by smlewis Mon, 2014-04-21 06:47 |
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How do I add hydrogen atoms to my PDB file? by monos_morpheus » Wed, 2011-03-30 03:30 |
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13,192 |
by rmoretti Mon, 2014-04-21 06:47 |
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This element is not expected. by ac.research » Fri, 2017-10-13 03:47 |
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6,633 |
by vmulligan Thu, 2020-07-16 23:31 |
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Fe3p Heme Iron Unrecognized Despite Loading Hem Params by vsjasion » Fri, 2011-09-02 10:37 |
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7,194 |
by tigerous Mon, 2014-04-21 06:47 |
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Relax structure using Membrane Environment Scoring Function by anna.duncan » Thu, 2010-02-04 08:01 |
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7,536 |
by jruhym Mon, 2014-04-21 06:47 |
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Cannot run binaries after successful compilation by ac.research » Mon, 2017-08-14 02:56 |
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6,608 |
by ac.research Fri, 2017-08-18 00:57 |
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Can i start again the job ? by byin » Thu, 2011-09-15 01:19 |
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5,056 |
by byin Mon, 2014-04-21 06:47 |
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NR Database Download in install_dependencies.pl (for make_fragments.pl) Broken by Jacob_Verburgt » Tue, 2020-03-10 08:58 |
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4,713 |
by Jacob_Verburgt Wed, 2020-03-11 05:18 |
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ERROR: compiling rosetta3.1 with MPI by biofisikx » Thu, 2010-08-05 16:00 |
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6,107 |
by smlewis Mon, 2014-04-21 06:47 |
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dG_separated threshold for identifying non-binding peptides with InterfaceAnalyzer. by jyotisutar9 » Thu, 2016-12-01 00:39 |
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5,428 |
by jyotisutar9 Wed, 2016-12-14 09:39 |
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Using Patches in Rosetta by JS » Wed, 2010-03-10 13:32 |
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7,694 |
by JS Mon, 2014-04-21 06:47 |
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How to handle/retain Metals (Zn, Ca) inside the Protein? by aniyaz » Wed, 2023-01-11 03:21 |
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861 |
by rmoretti Mon, 2023-02-20 16:07 |
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distances definition in course-grained (centroid mode) steps by allan.ferrari » Tue, 2017-01-03 05:15 |
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4,864 |
by allan.ferrari Tue, 2017-01-03 11:15 |
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I used mpirun/mpiexec and it runs same job 32times by leygkn » Mon, 2020-09-21 00:53 |
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3,539 |
by jadolfbr Thu, 2020-09-24 10:04 |
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What's a good application to thread a sequence over a peptide (of a peptide-protein complex) and minimize? by brspurri » Tue, 2013-02-12 08:19 |
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6,744 |
by smlewis Mon, 2014-04-21 06:47 |
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is it possible to ab initio only a part of a protein? by albumns » Sun, 2011-02-13 08:10 |
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4,552 |
by albumns Mon, 2014-04-21 06:47 |
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The design of a helical peptide by Jacob-kong » Tue, 2012-06-26 06:26 |
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7,770 |
by Jacob-kong Mon, 2014-04-21 06:47 |
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abinitiorelax: No funnel by cno » Tue, 2010-07-27 06:14 |
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5,160 |
by biofisikx Mon, 2014-04-21 06:47 |
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pdb files in Rosetta format by zhisheng » Mon, 2011-10-31 08:52 |
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6,823 |
by smlewis Mon, 2014-04-21 06:47 |
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Don't want to output the design structure by Lindsay » Wed, 2012-05-02 08:02 |
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5,314 |
by Anonymous Mon, 2014-04-21 06:47 |
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Atomic refinement with fixed ligand by ahmadkhalifa » Tue, 2018-07-24 10:41 |
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4,231 |
by rmoretti Mon, 2018-08-20 11:45 |
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No score.sc generated after running flexpepdock. by monos_morpheus » Sun, 2011-04-10 04:06 |
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5,769 |
by robren Mon, 2014-04-21 06:47 |
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Rosetta CM incorrect threading by ahmadkhalifa » Mon, 2018-08-06 11:09 |
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4,592 |
by rmoretti Fri, 2018-08-24 11:59 |
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How to run Rosetta3 in parallel by lennylv » Mon, 2009-03-30 04:21 |
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9,185 |
by rmoretti Mon, 2014-04-21 06:47 |
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Rosetta CM - Ignore Sporadic Errors by Swillard » Wed, 2018-06-13 05:47 |
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4,100 |
by rmoretti Mon, 2018-11-12 14:29 |
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Problem With Rosetta3.3 Comparative/Loop Modeling And Constraints by jurkm » Mon, 2011-09-12 01:01 |
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5,833 |
by jurkm Mon, 2014-04-21 06:47 |
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'-norepack_disulf' flag NOT work in Ligand-protein docking ? by darlintai » Tue, 2011-01-11 22:21 |
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5,774 |
by smlewis Mon, 2014-04-21 06:47 |
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Public subversion / Enzyme design public app by weallen » Tue, 2009-08-11 20:50 |
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4,994 |
by weallen Mon, 2014-04-21 06:47 |
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two questions about "Prepare structures for use in Rosetta" by Anonymous » Wed, 2012-06-06 08:13 |
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5,625 |
by Anonymous Mon, 2014-04-21 06:47 |
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Energy Calculation in Rosetta3.4 by sdg_lab » Thu, 2012-04-12 04:49 |
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10,830 |
by rmoretti Mon, 2014-04-21 06:47 |
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mitochondria protein modeling by rlwoltz » Fri, 2012-10-26 14:32 |
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6,432 |
by smlewis Mon, 2014-04-21 06:47 |
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what rotamer lib is used in rosetta3.5? by Lindsay » Thu, 2014-02-06 16:11 |
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5,846 |
by rmoretti Fri, 2014-03-28 09:03 |
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Add a ligand with only one atom (i.e. Zn) to the RosettaCM by lanselibai » Tue, 2021-06-22 10:28 |
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2,192 |
by rmoretti Thu, 2021-06-24 12:23 |
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how to cluster loop? by albumns » Wed, 2011-01-05 19:48 |
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6,061 |
by smlewis Mon, 2014-04-21 06:47 |
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optH flag makes hydrogen bond energy scores worse... by tsjain » Fri, 2012-07-13 14:04 |
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6,298 |
by smlewis Mon, 2014-04-21 06:47 |
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selecting pivot_residue in Backrub for ensemble generation by rohi » Fri, 2020-08-07 15:41 |
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3,470 |
by matteoferla Tue, 2020-08-11 10:00 |
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Native gives higher (positive) than lowest energy and clustered decoys by tiagogomes89 » Thu, 2011-06-02 07:19 |
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5,196 |
by rmoretti Mon, 2014-04-21 06:47 |
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RosettaDock - protonation states by LWilliamson » Tue, 2023-08-15 08:15 |
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322 |
by nannemdp Thu, 2023-08-24 08:21 |
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modeling loops between domains by dhorita » Thu, 2009-03-05 14:48 |
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5,280 |
by jarod Mon, 2014-04-21 06:47 |
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ERROR: beta_nov16(.wts) requested, but -corrections::beta_nov16 not set to true. This leads to a garbage scorefunction. by sia » Mon, 2023-05-08 06:36 |
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532 |
by rmoretti Tue, 2023-05-16 07:10 |
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membrane ab initio error after montecarlo by adva » Mon, 2012-12-24 01:43 |
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5,707 |
by tevang Mon, 2014-04-21 06:47 |
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Comparative Modeling databases? by nitroamos » Wed, 2011-11-23 14:54 |
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5,886 |
by rmoretti Thu, 2016-04-28 16:15 |
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RosettaHoles by ge0rgekh0ury » Mon, 2012-01-09 09:01 |
6 |
5,768 |
by Anonymous Mon, 2014-04-21 06:47 |
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Fixed bb design with hydrogen bond constraint by bharat_46010 » Mon, 2012-04-30 22:56 |
6 |
5,624 |
by smlewis Mon, 2014-04-21 06:47 |
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