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Rosetta 3 - General

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Normal topic Debugging Rosetta under XCode
by sacch » Sun, 2011-10-16 18:23
8
7,223 by sacch
Mon, 2014-04-21 06:47
Normal topic Using Patches in Rosetta
by JS » Wed, 2010-03-10 13:32
6
7,234 by JS
Mon, 2014-04-21 06:47
Normal topic ab inito memberane error
by albumns » Mon, 2011-02-14 10:58
5
7,236 by albumns
Mon, 2014-04-21 06:47
Normal topic is it possible to generate models without hydrogen?
by albumns » Fri, 2012-03-02 12:24
9
7,240 by albumns
Mon, 2014-04-21 06:47
Normal topic De novo Protein Design
by ac.research » Sat, 2017-07-15 10:39
5
7,256 by rmoretti
Mon, 2017-08-14 09:06
Normal topic Clustering using an disrupted run silent file
by PaulaBanks » Mon, 2013-07-15 02:19
9
7,296 by rmoretti
Wed, 2014-09-24 09:57
Normal topic kinematic loop modeling/sequence design keeps crashing with segmentation fault
by banshee » Thu, 2013-03-28 09:52
8
7,303 by smlewis
Mon, 2014-04-21 06:47
Normal topic The design of a helical peptide
by Jacob-kong » Tue, 2012-06-26 06:26
6
7,335 by Jacob-kong
Mon, 2014-04-21 06:47
Normal topic Docking + Active Site Design
by bharat_46010 » Sat, 2014-12-13 23:04
7
7,402 by rmoretti
Wed, 2015-01-21 08:43
Normal topic using constraints with AbinitioRelax (Rosetta 3.1)
by ndousis » Fri, 2009-12-18 08:56
8
7,506 by ndousis
Mon, 2014-04-21 06:47
Normal topic Loop Modeling with fixed backbone
by bharat_46010 » Mon, 2011-12-19 05:20
9
7,524 by bharat_46010
Mon, 2014-04-21 06:47
Normal topic pNNMAKE compilation
by adva » Sun, 2012-12-02 03:59
10
7,569 by smlewis
Mon, 2014-04-21 06:47
Normal topic Resfile
by vijayaraj81 » Thu, 2014-02-27 01:14
8
7,649 by vijayaraj81
Tue, 2014-03-04 05:07
Normal topic Using D-amino acids in Rosetta docking
by moehle » Wed, 2011-06-01 00:49
7
7,661 by moehle
Mon, 2014-04-21 06:47
Normal topic ERROR READING PDB FILE
by asmi » Sat, 2011-02-26 07:23
7
7,702 by smlewis
Mon, 2014-04-21 06:47
Normal topic B1_SampleSegment1.sh from RosettaES tutorial crashes
by ab » Tue, 2017-07-04 08:42
12
7,711 by brandon.frenz
Sat, 2017-07-08 13:49
Normal topic side-chain refinement
by qlj » Wed, 2013-02-20 04:40
6
7,759 by qlj
Mon, 2014-04-21 06:47
Normal topic Re: Protein-RNA interface design
by bharat_46010 » Tue, 2015-04-07 04:44
9
7,780 by rmoretti
Mon, 2015-06-01 15:27
Normal topic Talaris score function
by nawsad » Tue, 2013-05-21 03:32
7
7,835 by rmoretti
Mon, 2014-04-21 06:47
Normal topic input_score_filter not taken by program cluster ?
by Anonymous » Mon, 2012-06-11 09:14
9
7,863 by attesor
Fri, 2014-10-31 04:49
Normal topic what is "-relax:sequence" ?
by Anonymous » Fri, 2012-06-08 06:31
10
7,939 by smlewis
Mon, 2014-04-21 06:47
Normal topic hydrophobicity patch
by Lindsay » Fri, 2012-05-04 08:24
7
7,993 by Lindsay
Mon, 2014-04-21 06:47
Normal topic Docking double-stranded DNA to a protein
by xpzhang » Tue, 2012-01-31 12:35
5
8,107 by xpzhang
Mon, 2014-04-21 06:47
Normal topic Can Fold-and-dock protocol applied to membrane proteins
by justin » Thu, 2011-07-21 00:14
9
8,133 by wangyr
Mon, 2014-04-21 06:47
Normal topic error during docking
by zhisheng » Thu, 2012-02-02 12:10
10
8,144 by smlewis
Mon, 2014-04-21 06:47
Normal topic acceptable RMSD value in the clustered structures?
by ritacc18 » Wed, 2013-06-19 14:53
3
8,145 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Help with get_pdb.py for PDB file cleaning
by lzx32 » Mon, 2011-03-28 02:11
7
8,179 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to input constraints?
by violetsha7 » Wed, 2009-05-13 00:13
7
8,188 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to get multiple chains in PDB from Fold and Dock
by arthuc01 » Tue, 2012-05-29 02:05
9
8,216 by arthuc01
Mon, 2014-04-21 06:47
Normal topic Remote access to Rosetta on Blue Gene or another HPC system?
by rfieldhouse » Mon, 2011-05-16 08:40
10
8,239 by rfieldhouse
Mon, 2014-04-21 06:47
Normal topic AbinitioRelax with very small peptides
by jamsmad » Tue, 2012-09-04 13:45
9
8,285 by jamsmad
Mon, 2014-04-21 06:47
Normal topic Is it possible to do Abinitio folding from a linear structure.?
by monos_morpheus » Sat, 2011-04-16 09:13
11
8,317 by monos_morpheus
Mon, 2014-04-21 06:47
Normal topic Rosetta reference energy
by Lindsay » Mon, 2012-05-07 07:56
9
8,341 by Lindsay
Mon, 2014-04-21 06:47
Normal topic Why are all source codes .gz and not .tgz
by jasnyderjr » Tue, 2016-12-20 21:23
12
8,368 by smlewis
Thu, 2016-12-22 13:11
Normal topic Error when renumbering PDB
by dzhao » Wed, 2012-07-18 01:03
7
8,368 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Does the fold count reset if abinitio is restarted?
by burkheadlab » Mon, 2011-06-13 11:39
10
8,416 by rmoretti
Thu, 2017-02-02 08:32
Normal topic Submitting job to local cluster
by tusharranjanmoharana » Fri, 2016-04-15 01:38
8
8,533 by rmoretti
Mon, 2016-05-09 09:23
Normal topic How to run Rosetta3 in parallel
by lennylv » Mon, 2009-03-30 04:21
6
8,632 by rmoretti
Mon, 2014-04-21 06:47
Normal topic How do you implement phosphoserine in ab -initio folding?
by smiruthi » Fri, 2011-12-16 14:45
10
8,647 by brspurri
Mon, 2014-04-21 06:47
Normal topic memory issue rosetta3.4 scripts
by ast » Mon, 2013-01-28 06:25
8
8,689 by smlewis
Mon, 2014-04-21 06:47
Normal topic fragment-based loop modeling to get a helix at the loop site
by berk » Wed, 2013-05-29 06:00
11
8,810 by rmoretti
Mon, 2014-04-21 06:47
Normal topic relax structure before design?
by Lindsay » Tue, 2013-11-05 20:50
7
8,837 by rmoretti
Mon, 2014-04-21 06:48
Normal topic RosettaMatch
by jtmacd » Wed, 2012-01-11 06:50
5
8,851 by jtmacd
Mon, 2014-04-21 06:47
Normal topic MPI stall
by jadolfbr » Thu, 2013-10-10 18:59
9
9,190 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Change the number of residues on pdb file!
by phanvy » Tue, 2014-04-15 23:26
3
9,205 by rmoretti
Mon, 2015-02-09 09:09
Normal topic Constraints in Loop Modeling
by Julix » Wed, 2012-12-05 07:08
11
9,266 by rmoretti
Mon, 2014-04-21 06:47
Normal topic what is minirosetta
by Lindsay » Tue, 2012-04-10 07:48
2
9,267 by Lindsay
Mon, 2014-04-21 06:47
Normal topic Copying angles (pose.set_phi()) from a substructure with the same sequence to pose doesn't produce the exact same substructure?
by resiros » Wed, 2012-08-22 07:20
13
9,292 by smlewis
Mon, 2014-04-21 06:47
Normal topic latest version of rosetta--unable to build models
by pramod » Mon, 2014-11-03 11:40
10
9,318 by jadolfbr
Wed, 2014-11-26 11:40
Normal topic How to deal with Cu-as a ligand or as part of the receptor?
by hanypao » Fri, 2011-09-30 18:50
7
9,355 by rmoretti
Mon, 2014-04-21 06:47
Normal topic about Residue Number in Rosetta
by jiongzhang » Mon, 2012-06-11 14:58
7
9,360 by smlewis
Mon, 2014-04-21 06:47
Normal topic energy minimization of loop only
by jtmacd » Wed, 2011-01-12 07:09
9
9,427 by lanselibai
Wed, 2014-10-15 01:41
Normal topic how to design binding interface?
by Lindsay » Mon, 2013-12-02 19:06
8
9,431 by rmoretti
Tue, 2019-07-09 12:50
Normal topic -dock_pert problem
by mahajanr » Mon, 2010-07-19 15:45
11
9,480 by weitzner
Mon, 2014-04-21 06:47
Normal topic fixbb minimize sidechains with symmetric pose - recompile?
by Anonymous » Wed, 2012-08-22 06:14
13
9,601 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Modeling of a Multi-Domain Dimer
by jurkm » Mon, 2011-08-29 01:39
10
9,674 by jurkm
Mon, 2014-04-21 06:47
Normal topic I'm a total beginner to Rosetta 3.2 and there are no tutorials for me to follow. Can someone help.? =)
by monos_morpheus » Wed, 2011-02-02 08:11
12
9,719 by monos_morpheus
Mon, 2014-04-21 06:47
Normal topic nr.fasta
by silvia » Wed, 2013-01-23 10:08
5
9,742 by dgront
Mon, 2014-04-21 06:47
Normal topic How to calculate the binding energy of peptide and a protein?
by tianbu » Thu, 2014-02-13 20:44
9
9,778 by tianbu
Mon, 2014-02-17 03:36
Normal topic Change in binding energy after mutation in interface?
by cossio » Mon, 2014-12-01 06:27
9
9,834 by rmoretti
Thu, 2015-04-30 16:25
Normal topic Using Degenerate Protons in Rosetta3.x
by jurkm » Wed, 2011-06-08 03:25
10
9,917 by jurkm
Mon, 2014-04-21 06:47
Normal topic Error when running prepack of PLEXPEPDOCKING
by phanvy » Wed, 2014-06-18 07:11
11
9,936 by G Mustafa
Fri, 2021-09-10 08:20
Normal topic Modeling circular permutation and domain insertion
by bharat_46010 » Sun, 2011-04-10 19:54
13
9,997 by bharat_46010
Mon, 2014-04-21 06:47
Normal topic Warning when running cluster program
by Anonymous » Fri, 2012-06-15 02:39
14
10,028 by Anonymous
Mon, 2014-04-21 06:47
Normal topic How to put rdc data in refinement protocol?
by zhisheng » Tue, 2012-11-20 03:55
13
10,129 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Energy Calculation in Rosetta3.4
by sdg_lab » Thu, 2012-04-12 04:49
6
10,182 by rmoretti
Mon, 2014-04-21 06:47
Normal topic flexible backbone design (fixbb+relax)
by sdh_h » Mon, 2013-02-04 03:19
9
10,291 by gsmurphy
Mon, 2014-04-21 06:47
Normal topic lysine-aspartate isopeptide bond
by matteoferla » Tue, 2016-11-01 10:54
13
10,373 by ablakely7
Wed, 2019-09-11 15:33
Normal topic error about 'std::bad_alloc' during running
by zhisheng » Mon, 2011-01-10 09:45
4
10,539 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to do ab initio with fixed part of protein
by eunwook » Tue, 2013-04-16 03:00
11
10,655 by rmoretti
Mon, 2014-04-21 06:47
Normal topic AbinitioRelax using multiple cores on a single machine without mpi?
by JoG » Tue, 2011-10-25 00:40
7
10,658 by smlewis
Mon, 2014-04-21 06:47
Normal topic Anyone here knows what is the protocol capture archive???????!!
by MajorID » Thu, 2011-06-02 01:50
12
10,732 by rmoretti
Fri, 2015-04-24 12:15
Normal topic Rosetta 3.1 compile error, Linux 32 bit
by viochemist » Thu, 2010-07-29 08:40
11
11,065 by smlewis
Mon, 2014-04-21 06:47
Normal topic how to design a protein complex
by Lindsay » Tue, 2013-11-05 20:24
11
11,078 by Lindsay
Mon, 2014-04-21 06:48
Normal topic fragment_picker problem
by adva » Tue, 2012-12-18 01:15
13
11,105 by sabine
Mon, 2014-04-21 06:47
Normal topic AB INITIO WITH METALLOPROTEIN
by kaue » Sun, 2012-06-17 14:04
11
11,148 by masterofpuppets
Tue, 2015-02-10 01:33
Hot topic Docking a protein into a symmetrical complex
by saxen » Fri, 2011-04-08 22:24
15
11,719 by saxen
Mon, 2014-04-21 06:47
Normal topic disulfide bonds using abinitio folding module
by crfenollar » Wed, 2010-02-24 03:26
10
11,760 by lanselibai
Tue, 2015-02-10 14:03
Normal topic Error when running FRAGMENT generation
by phanvy » Sat, 2014-09-20 17:53
12
11,860 by rmoretti
Mon, 2014-10-06 16:50
Hot topic Ligand Docking Positive Control: wt ligand
by Basantab » Thu, 2011-10-27 13:36
16
12,111 by Basantab
Mon, 2014-04-21 06:47
Hot topic high resolution protein docking doesn't work
by albumns » Thu, 2010-12-02 02:36
17
12,262 by albumns
Mon, 2014-04-21 06:47
Normal topic make_fragment.pl Error!
by Apiwat » Sat, 2014-02-15 13:35
12
12,301 by Apiwat
Tue, 2014-03-11 09:42
Normal topic How do I add hydrogen atoms to my PDB file?
by monos_morpheus » Wed, 2011-03-30 03:30
6
12,423 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Docking an iron atom to a peptide
by buzb » Wed, 2011-01-26 09:49
12
12,492 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to relax only one domain of a protein and keep the rest of them fixed
by tevang » Sun, 2011-04-10 03:16
14
12,600 by smlewis
Mon, 2014-04-21 06:47
Normal topic ERROR when run prepacking pdbfile in Rosetta 3.4
by phanvy » Thu, 2014-04-17 00:04
14
12,914 by phanvy
Wed, 2014-06-18 07:50
Hot topic protein interface design for multi-chain complex
by jarod » Sun, 2013-05-05 23:18
16
13,331 by rmoretti
Mon, 2014-04-21 06:47
Hot topic modified Serine: FoldTree::reorder( 1 ) failed, new/old edge_list_ size mismatch error
by Karol » Wed, 2016-05-04 08:47
17
13,728 by smlewis
Tue, 2016-05-17 08:06
Hot topic problem compiling rosetta3.1 in windows vista 32 bit using cygwin 1.7.5-1
by Marsia » Thu, 2010-07-22 22:49
18
13,738 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to extract specific pdb from silent files
by eunwook » Tue, 2013-05-14 05:29
5
13,789 by nawsad
Mon, 2014-04-21 06:47
Normal topic Ab Initio Modelling of Protein with Small-Molecule Cofactor
by jurkm » Thu, 2011-03-10 06:56
14
14,140 by jseco
Mon, 2021-03-08 03:46
Normal topic how to make a combined PDB file?
by fenghc » Mon, 2013-04-01 06:27
3
14,191 by smlewis
Mon, 2014-04-21 06:47
Hot topic Steps to use D-amino acids
by tevang » Mon, 2012-09-10 15:42
15
14,313 by tevang
Mon, 2014-04-21 06:47
Normal topic minirosetta segmentation fault
by sabine » Wed, 2013-12-11 13:08
13
14,355 by rmoretti
Tue, 2014-11-11 13:56
Hot topic RE: Loop Modeling and Beta-strand design
by bharat_46010 » Sun, 2012-02-12 16:34
19
14,422 by smlewis
Mon, 2014-04-21 06:47
Hot topic membrane abinitio on heteromultimeric complexes
by omirus » Fri, 2013-04-26 14:48
19
14,760 by pledor
Mon, 2014-04-21 06:47
Normal topic talaris2013 energy terms modifications
by peony » Sat, 2013-11-23 02:48
8
14,836 by rmoretti
Mon, 2014-04-21 06:48
Hot topic Creating centroid patches for Proline (pro_hydroxylated_case1 and pro_hydroxylated_case2)
by skovacs » Thu, 2012-05-10 20:10
18
15,139 by aaj
Fri, 2016-04-22 15:20
Normal topic Moving Rosetta to C++11 standard
by smlewis » Wed, 2012-02-29 12:30
1
15,219 by rmoretti
Sat, 2015-09-05 12:10
Normal topic Histidine protonation
by DmitriiN » Mon, 2016-09-26 13:15
11
15,430 by rmoretti
Mon, 2018-01-15 15:37
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