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Rosetta 3 - General
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Debugging Rosetta under XCode by sacch » Sun, 2011-10-16 18:23 |
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7,223 |
by sacch Mon, 2014-04-21 06:47 |
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Using Patches in Rosetta by JS » Wed, 2010-03-10 13:32 |
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7,234 |
by JS Mon, 2014-04-21 06:47 |
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ab inito memberane error by albumns » Mon, 2011-02-14 10:58 |
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7,236 |
by albumns Mon, 2014-04-21 06:47 |
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is it possible to generate models without hydrogen? by albumns » Fri, 2012-03-02 12:24 |
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7,240 |
by albumns Mon, 2014-04-21 06:47 |
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De novo Protein Design by ac.research » Sat, 2017-07-15 10:39 |
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7,256 |
by rmoretti Mon, 2017-08-14 09:06 |
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Clustering using an disrupted run silent file by PaulaBanks » Mon, 2013-07-15 02:19 |
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7,296 |
by rmoretti Wed, 2014-09-24 09:57 |
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kinematic loop modeling/sequence design keeps crashing with segmentation fault by banshee » Thu, 2013-03-28 09:52 |
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7,303 |
by smlewis Mon, 2014-04-21 06:47 |
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The design of a helical peptide by Jacob-kong » Tue, 2012-06-26 06:26 |
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7,335 |
by Jacob-kong Mon, 2014-04-21 06:47 |
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Docking + Active Site Design by bharat_46010 » Sat, 2014-12-13 23:04 |
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7,402 |
by rmoretti Wed, 2015-01-21 08:43 |
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using constraints with AbinitioRelax (Rosetta 3.1) by ndousis » Fri, 2009-12-18 08:56 |
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7,506 |
by ndousis Mon, 2014-04-21 06:47 |
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Loop Modeling with fixed backbone by bharat_46010 » Mon, 2011-12-19 05:20 |
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7,524 |
by bharat_46010 Mon, 2014-04-21 06:47 |
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pNNMAKE compilation by adva » Sun, 2012-12-02 03:59 |
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7,569 |
by smlewis Mon, 2014-04-21 06:47 |
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Resfile by vijayaraj81 » Thu, 2014-02-27 01:14 |
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7,649 |
by vijayaraj81 Tue, 2014-03-04 05:07 |
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Using D-amino acids in Rosetta docking by moehle » Wed, 2011-06-01 00:49 |
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7,661 |
by moehle Mon, 2014-04-21 06:47 |
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ERROR READING PDB FILE by asmi » Sat, 2011-02-26 07:23 |
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7,702 |
by smlewis Mon, 2014-04-21 06:47 |
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B1_SampleSegment1.sh from RosettaES tutorial crashes by ab » Tue, 2017-07-04 08:42 |
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7,711 |
by brandon.frenz Sat, 2017-07-08 13:49 |
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side-chain refinement by qlj » Wed, 2013-02-20 04:40 |
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7,759 |
by qlj Mon, 2014-04-21 06:47 |
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Re: Protein-RNA interface design by bharat_46010 » Tue, 2015-04-07 04:44 |
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7,780 |
by rmoretti Mon, 2015-06-01 15:27 |
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Talaris score function by nawsad » Tue, 2013-05-21 03:32 |
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7,835 |
by rmoretti Mon, 2014-04-21 06:47 |
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input_score_filter not taken by program cluster ? by Anonymous » Mon, 2012-06-11 09:14 |
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7,863 |
by attesor Fri, 2014-10-31 04:49 |
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what is "-relax:sequence" ? by Anonymous » Fri, 2012-06-08 06:31 |
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7,939 |
by smlewis Mon, 2014-04-21 06:47 |
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hydrophobicity patch by Lindsay » Fri, 2012-05-04 08:24 |
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7,993 |
by Lindsay Mon, 2014-04-21 06:47 |
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Docking double-stranded DNA to a protein by xpzhang » Tue, 2012-01-31 12:35 |
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8,107 |
by xpzhang Mon, 2014-04-21 06:47 |
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Can Fold-and-dock protocol applied to membrane proteins by justin » Thu, 2011-07-21 00:14 |
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8,133 |
by wangyr Mon, 2014-04-21 06:47 |
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error during docking by zhisheng » Thu, 2012-02-02 12:10 |
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8,144 |
by smlewis Mon, 2014-04-21 06:47 |
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acceptable RMSD value in the clustered structures? by ritacc18 » Wed, 2013-06-19 14:53 |
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8,145 |
by rmoretti Mon, 2014-04-21 06:48 |
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Help with get_pdb.py for PDB file cleaning by lzx32 » Mon, 2011-03-28 02:11 |
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8,179 |
by smlewis Mon, 2014-04-21 06:47 |
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How to input constraints? by violetsha7 » Wed, 2009-05-13 00:13 |
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8,188 |
by smlewis Mon, 2014-04-21 06:47 |
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How to get multiple chains in PDB from Fold and Dock by arthuc01 » Tue, 2012-05-29 02:05 |
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8,216 |
by arthuc01 Mon, 2014-04-21 06:47 |
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Remote access to Rosetta on Blue Gene or another HPC system? by rfieldhouse » Mon, 2011-05-16 08:40 |
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8,239 |
by rfieldhouse Mon, 2014-04-21 06:47 |
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AbinitioRelax with very small peptides by jamsmad » Tue, 2012-09-04 13:45 |
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8,285 |
by jamsmad Mon, 2014-04-21 06:47 |
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Is it possible to do Abinitio folding from a linear structure.? by monos_morpheus » Sat, 2011-04-16 09:13 |
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8,317 |
by monos_morpheus Mon, 2014-04-21 06:47 |
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Rosetta reference energy by Lindsay » Mon, 2012-05-07 07:56 |
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8,341 |
by Lindsay Mon, 2014-04-21 06:47 |
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Why are all source codes .gz and not .tgz by jasnyderjr » Tue, 2016-12-20 21:23 |
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8,368 |
by smlewis Thu, 2016-12-22 13:11 |
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Error when renumbering PDB by dzhao » Wed, 2012-07-18 01:03 |
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8,368 |
by rmoretti Mon, 2014-04-21 06:47 |
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Does the fold count reset if abinitio is restarted? by burkheadlab » Mon, 2011-06-13 11:39 |
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8,416 |
by rmoretti Thu, 2017-02-02 08:32 |
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Submitting job to local cluster by tusharranjanmoharana » Fri, 2016-04-15 01:38 |
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8,533 |
by rmoretti Mon, 2016-05-09 09:23 |
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How to run Rosetta3 in parallel by lennylv » Mon, 2009-03-30 04:21 |
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8,632 |
by rmoretti Mon, 2014-04-21 06:47 |
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How do you implement phosphoserine in ab -initio folding? by smiruthi » Fri, 2011-12-16 14:45 |
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8,647 |
by brspurri Mon, 2014-04-21 06:47 |
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memory issue rosetta3.4 scripts by ast » Mon, 2013-01-28 06:25 |
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8,689 |
by smlewis Mon, 2014-04-21 06:47 |
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fragment-based loop modeling to get a helix at the loop site by berk » Wed, 2013-05-29 06:00 |
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8,810 |
by rmoretti Mon, 2014-04-21 06:47 |
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relax structure before design? by Lindsay » Tue, 2013-11-05 20:50 |
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8,837 |
by rmoretti Mon, 2014-04-21 06:48 |
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RosettaMatch by jtmacd » Wed, 2012-01-11 06:50 |
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8,851 |
by jtmacd Mon, 2014-04-21 06:47 |
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MPI stall by jadolfbr » Thu, 2013-10-10 18:59 |
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9,190 |
by jadolfbr Mon, 2014-04-21 06:48 |
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Change the number of residues on pdb file! by phanvy » Tue, 2014-04-15 23:26 |
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9,205 |
by rmoretti Mon, 2015-02-09 09:09 |
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Constraints in Loop Modeling by Julix » Wed, 2012-12-05 07:08 |
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9,266 |
by rmoretti Mon, 2014-04-21 06:47 |
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what is minirosetta by Lindsay » Tue, 2012-04-10 07:48 |
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9,267 |
by Lindsay Mon, 2014-04-21 06:47 |
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Copying angles (pose.set_phi()) from a substructure with the same sequence to pose doesn't produce the exact same substructure? by resiros » Wed, 2012-08-22 07:20 |
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9,292 |
by smlewis Mon, 2014-04-21 06:47 |
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latest version of rosetta--unable to build models by pramod » Mon, 2014-11-03 11:40 |
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9,318 |
by jadolfbr Wed, 2014-11-26 11:40 |
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How to deal with Cu-as a ligand or as part of the receptor? by hanypao » Fri, 2011-09-30 18:50 |
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9,355 |
by rmoretti Mon, 2014-04-21 06:47 |
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about Residue Number in Rosetta by jiongzhang » Mon, 2012-06-11 14:58 |
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9,360 |
by smlewis Mon, 2014-04-21 06:47 |
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energy minimization of loop only by jtmacd » Wed, 2011-01-12 07:09 |
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9,427 |
by lanselibai Wed, 2014-10-15 01:41 |
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how to design binding interface? by Lindsay » Mon, 2013-12-02 19:06 |
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9,431 |
by rmoretti Tue, 2019-07-09 12:50 |
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-dock_pert problem by mahajanr » Mon, 2010-07-19 15:45 |
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9,480 |
by weitzner Mon, 2014-04-21 06:47 |
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fixbb minimize sidechains with symmetric pose - recompile? by Anonymous » Wed, 2012-08-22 06:14 |
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9,601 |
by jadolfbr Mon, 2014-04-21 06:47 |
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Modeling of a Multi-Domain Dimer by jurkm » Mon, 2011-08-29 01:39 |
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9,674 |
by jurkm Mon, 2014-04-21 06:47 |
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I'm a total beginner to Rosetta 3.2 and there are no tutorials for me to follow. Can someone help.? =) by monos_morpheus » Wed, 2011-02-02 08:11 |
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9,719 |
by monos_morpheus Mon, 2014-04-21 06:47 |
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nr.fasta by silvia » Wed, 2013-01-23 10:08 |
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9,742 |
by dgront Mon, 2014-04-21 06:47 |
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How to calculate the binding energy of peptide and a protein? by tianbu » Thu, 2014-02-13 20:44 |
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9,778 |
by tianbu Mon, 2014-02-17 03:36 |
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Change in binding energy after mutation in interface? by cossio » Mon, 2014-12-01 06:27 |
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9,834 |
by rmoretti Thu, 2015-04-30 16:25 |
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Using Degenerate Protons in Rosetta3.x by jurkm » Wed, 2011-06-08 03:25 |
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9,917 |
by jurkm Mon, 2014-04-21 06:47 |
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Error when running prepack of PLEXPEPDOCKING by phanvy » Wed, 2014-06-18 07:11 |
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9,936 |
by G Mustafa Fri, 2021-09-10 08:20 |
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Modeling circular permutation and domain insertion by bharat_46010 » Sun, 2011-04-10 19:54 |
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9,997 |
by bharat_46010 Mon, 2014-04-21 06:47 |
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Warning when running cluster program by Anonymous » Fri, 2012-06-15 02:39 |
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10,028 |
by Anonymous Mon, 2014-04-21 06:47 |
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How to put rdc data in refinement protocol? by zhisheng » Tue, 2012-11-20 03:55 |
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10,129 |
by rmoretti Mon, 2014-04-21 06:47 |
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Energy Calculation in Rosetta3.4 by sdg_lab » Thu, 2012-04-12 04:49 |
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10,182 |
by rmoretti Mon, 2014-04-21 06:47 |
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flexible backbone design (fixbb+relax) by sdh_h » Mon, 2013-02-04 03:19 |
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10,291 |
by gsmurphy Mon, 2014-04-21 06:47 |
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lysine-aspartate isopeptide bond by matteoferla » Tue, 2016-11-01 10:54 |
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10,373 |
by ablakely7 Wed, 2019-09-11 15:33 |
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error about 'std::bad_alloc' during running by zhisheng » Mon, 2011-01-10 09:45 |
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10,539 |
by smlewis Mon, 2014-04-21 06:47 |
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How to do ab initio with fixed part of protein by eunwook » Tue, 2013-04-16 03:00 |
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10,655 |
by rmoretti Mon, 2014-04-21 06:47 |
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AbinitioRelax using multiple cores on a single machine without mpi? by JoG » Tue, 2011-10-25 00:40 |
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10,658 |
by smlewis Mon, 2014-04-21 06:47 |
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Anyone here knows what is the protocol capture archive???????!! by MajorID » Thu, 2011-06-02 01:50 |
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10,732 |
by rmoretti Fri, 2015-04-24 12:15 |
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Rosetta 3.1 compile error, Linux 32 bit by viochemist » Thu, 2010-07-29 08:40 |
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11,065 |
by smlewis Mon, 2014-04-21 06:47 |
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how to design a protein complex by Lindsay » Tue, 2013-11-05 20:24 |
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11,078 |
by Lindsay Mon, 2014-04-21 06:48 |
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fragment_picker problem by adva » Tue, 2012-12-18 01:15 |
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11,105 |
by sabine Mon, 2014-04-21 06:47 |
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AB INITIO WITH METALLOPROTEIN by kaue » Sun, 2012-06-17 14:04 |
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11,148 |
by masterofpuppets Tue, 2015-02-10 01:33 |
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Docking a protein into a symmetrical complex by saxen » Fri, 2011-04-08 22:24 |
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11,719 |
by saxen Mon, 2014-04-21 06:47 |
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disulfide bonds using abinitio folding module by crfenollar » Wed, 2010-02-24 03:26 |
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11,760 |
by lanselibai Tue, 2015-02-10 14:03 |
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Error when running FRAGMENT generation by phanvy » Sat, 2014-09-20 17:53 |
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11,860 |
by rmoretti Mon, 2014-10-06 16:50 |
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Ligand Docking Positive Control: wt ligand by Basantab » Thu, 2011-10-27 13:36 |
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12,111 |
by Basantab Mon, 2014-04-21 06:47 |
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high resolution protein docking doesn't work by albumns » Thu, 2010-12-02 02:36 |
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12,262 |
by albumns Mon, 2014-04-21 06:47 |
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make_fragment.pl Error! by Apiwat » Sat, 2014-02-15 13:35 |
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12,301 |
by Apiwat Tue, 2014-03-11 09:42 |
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How do I add hydrogen atoms to my PDB file? by monos_morpheus » Wed, 2011-03-30 03:30 |
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12,423 |
by rmoretti Mon, 2014-04-21 06:47 |
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Docking an iron atom to a peptide by buzb » Wed, 2011-01-26 09:49 |
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12,492 |
by smlewis Mon, 2014-04-21 06:47 |
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How to relax only one domain of a protein and keep the rest of them fixed by tevang » Sun, 2011-04-10 03:16 |
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12,600 |
by smlewis Mon, 2014-04-21 06:47 |
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ERROR when run prepacking pdbfile in Rosetta 3.4 by phanvy » Thu, 2014-04-17 00:04 |
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12,914 |
by phanvy Wed, 2014-06-18 07:50 |
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protein interface design for multi-chain complex by jarod » Sun, 2013-05-05 23:18 |
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13,331 |
by rmoretti Mon, 2014-04-21 06:47 |
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modified Serine: FoldTree::reorder( 1 ) failed, new/old edge_list_ size mismatch error by Karol » Wed, 2016-05-04 08:47 |
17 |
13,728 |
by smlewis Tue, 2016-05-17 08:06 |
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problem compiling rosetta3.1 in windows vista 32 bit using cygwin 1.7.5-1 by Marsia » Thu, 2010-07-22 22:49 |
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13,738 |
by smlewis Mon, 2014-04-21 06:47 |
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How to extract specific pdb from silent files by eunwook » Tue, 2013-05-14 05:29 |
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13,789 |
by nawsad Mon, 2014-04-21 06:47 |
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Ab Initio Modelling of Protein with Small-Molecule Cofactor by jurkm » Thu, 2011-03-10 06:56 |
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14,140 |
by jseco Mon, 2021-03-08 03:46 |
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how to make a combined PDB file? by fenghc » Mon, 2013-04-01 06:27 |
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14,191 |
by smlewis Mon, 2014-04-21 06:47 |
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Steps to use D-amino acids by tevang » Mon, 2012-09-10 15:42 |
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14,313 |
by tevang Mon, 2014-04-21 06:47 |
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minirosetta segmentation fault by sabine » Wed, 2013-12-11 13:08 |
13 |
14,355 |
by rmoretti Tue, 2014-11-11 13:56 |
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RE: Loop Modeling and Beta-strand design by bharat_46010 » Sun, 2012-02-12 16:34 |
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14,422 |
by smlewis Mon, 2014-04-21 06:47 |
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membrane abinitio on heteromultimeric complexes by omirus » Fri, 2013-04-26 14:48 |
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14,760 |
by pledor Mon, 2014-04-21 06:47 |
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talaris2013 energy terms modifications by peony » Sat, 2013-11-23 02:48 |
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14,836 |
by rmoretti Mon, 2014-04-21 06:48 |
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Creating centroid patches for Proline (pro_hydroxylated_case1 and pro_hydroxylated_case2) by skovacs » Thu, 2012-05-10 20:10 |
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15,139 |
by aaj Fri, 2016-04-22 15:20 |
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Moving Rosetta to C++11 standard by smlewis » Wed, 2012-02-29 12:30 |
1 |
15,219 |
by rmoretti Sat, 2015-09-05 12:10 |
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Histidine protonation by DmitriiN » Mon, 2016-09-26 13:15 |
11 |
15,430 |
by rmoretti Mon, 2018-01-15 15:37 |
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